K18311

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18311

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18311

Determination of introduced cDNA(s)

  • J013170E20 - Rice Full-length cDNAs - Original: J013170E20

    full reading [+] show sequence

    Nucleotide sequence: J013170E20 - full reading 
    GGTACTACGC CAATGGCTCT CCGCTGCCTA GCTGCTGCCG CAGTACAGCT 
    TGATCGTTGC CCGTAACCTC CCGTGGCTCC GATCCCGTCT CCGGCGCGGC 
    GCGCGGCTCG GCGTTGAGAC AGTTTGCCGC CTCATGTCCC GGGAGCTGGA 
    GCTGCTGCTG TTTTTGCTGG CCCTACGGGC GAGCGGCGAG GTCGTCGCGG 
    GTTCGGCGGA GGCAGCGGCA GCGGCAGCGG CGTGGCCCGC GCTGCAGGTG 
    GGGTTCTACC ATGCCAAGTG CCCTGTCGCG GAGGACGTCG TGCTGGGCGA 
    GATGAGGATG ATCCTCGAGG AGGATCCCAC GCTCGCGCCG TCTCTGCTCC 
    GGATGCACTA CCACGACTGC TTCGTCCAGG GGTGTGACGG ATCGATCATG 
    CTGAGGTCGA GGAGCGGGAA GGGGGAGAGG GACGCGACGC CCAACCGGAG 
    CATGCGGGGC TACGACGCCA TCAATCGGAT CAAGGCGAGG CTGGAGACCG 
    TCTGCCCGCT CACCGTCTCC TGCGCCGACA TCATCGCCAT GGCGGCGAGA 
    GACGCCGTCT ACCTGAGCAA GGGGCCGTGG TACGACGTGG AGACCGGGAG 
    GAGGGACGGC GACGTGAGCG TGGCCGAGTA CGCCGAGAAC GACCTGGCGC 
    CGCCGGACTC CAACATCGTC GACGTCAAGA CCTTCTTCAG CGTCAAGTCT 
    CTCAACGCCA AGGACATCGC CGTGCTCTTC GGATGCCACA GCATCGGGAC 
    GTCGCACTGC GGGGCGTTCC AGAAGCGGCT GTACAACTTC ACCGGAAGGA 
    TGGACCAGGA CCCGTCGCTG GACGCCGGCT ACGCGGCGAA GCTCAAGAAG 
    CTCTGCCCGC CGGGGCACGG CCACGACCAC GACCACGACG GCCATGGCGG 
    CGCCGGCGGC GCGGCCAAGG TGCCCATGGA CCCCGGCAGC GGCTTCACAT 
    TCGACCTGAG CTACTACCGG CACGTGCTCG CCACGGGCGG CCTGTTCCAG 
    TCGGACGGCA GCCTCCGCGA CGACCCCGTC ACGAGGGGCT ACGTCGAGAA 
    GCTCGCCAAC GCGTCGTCGT CGGAGGAGTA CTTCGCCGAC TTCGCGGCGG 
    CGATGGTCAA GATGGGCCGC ACCGACGTGC TCACCGGCGA TCTCGGGGCG 
    GTCAGGCCGA CGTGTGACAG CCTCGTCGAC TAGTTTATTC GGCGTCCCGC 
    CACATTTGTG ATCTGTAGAA TTTTATATGG TTTTCTCTGT AACATATATG 
    TAATTTCGAT TTAGATTAGG GAAAGGTTGA GACTTGAGAG AAGTTGCAGT 
    TTCTACGCTT TTGAGGAGAC TGATTGGAAC AGCGTATGAA TCTAGAGTTA 
    AACACTTGTC AGTTGTCAAA CTACTACAAA CTAATGAATC TGTACAGATG 
    GGCTTGATG

    Gene models with high sequence identity

    1. AT1G05260.1 [+] show detail - Peroxidase superfamily protein
      E-value: 1e-75; Score: 280.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 4.6e-52
    superfamily Haem peroxidase 7.1e-94
    HMMPfam Haem peroxidase, plant/fungal/bacterial 1.8e-66
    ProfileScan Haem peroxidase, plant/fungal/bacterial 67.672
    FPrintScan Plant peroxidase 3.6e-45
    FPrintScan Plant peroxidase 3.6e-45
    FPrintScan Plant peroxidase 3.6e-45
    FPrintScan Plant peroxidase 3.6e-45
    FPrintScan Plant peroxidase 3.6e-45
    FPrintScan Plant peroxidase 3.6e-45
    FPrintScan Plant peroxidase 3.6e-45
    FPrintScan Plant peroxidase 3.6e-45
    FPrintScan Plant peroxidase 3.6e-45
    FPrintScan Haem peroxidase, plant/fungal/bacterial 2.3e-24
    FPrintScan Haem peroxidase, plant/fungal/bacterial 2.3e-24
    FPrintScan Haem peroxidase, plant/fungal/bacterial 2.3e-24
    FPrintScan Haem peroxidase, plant/fungal/bacterial 2.3e-24
    FPrintScan Haem peroxidase, plant/fungal/bacterial 2.3e-24

    See the detailed result >

    AT1G05260.1

    Model type
    Protein coding
    Short Description
    Peroxidase superfamily protein
    Curator Summary
    Encodes a cold-inducible cationic peroxidase that is involved in the stress response. In response to low temperature, RCI3 transcripts accumulate in the aerial part and in roots of etiolated seedlings but only in roots of light-grown seedlings.
    Computational Description
    RARE COLD INDUCIBLE GENE 3 (RCI3); FUNCTIONS IN: peroxidase activity; INVOLVED IN: response to desiccation, response to cold, hyperosmotic salinity response; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT3G21770.1); Has 4433 Blast hits to 4402 proteins in 259 species: Archae - 0; Bacteria - 4; Metazoa - 3; Fungi - 76; Plants - 4304; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR