K18314

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18314

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18314

Determination of introduced cDNA(s)

  • J033136N08 - Rice Full-length cDNAs - Original: J033136N08

    full reading [+] show sequence

    Nucleotide sequence: J033136N08 - full reading 
    GAAAGAGAAG CTCTCCGCTT CGCCGGCGCC GCTCCCCCCA CCCCCGCGCG 
    CGGAAGATTG TCCTCGTGGC GGAGCGCGTG CTGCGGCTGT TGTGCTGCAC 
    AGCCGCCGGG CACCACATTT GCAGCAGCGC CGCCTCCGCC GCACTCGTCC 
    ATCGCCGGAG CTTCCGCTAG GGTTTCGGCG AGCCGGGGGG AGGGGGGGGG 
    GGGTGAGGTG GGCCGTCCGC CGCCGCCTCC GCGGAGTTCC TGCCTGACGA 
    CTGGATCACG CAGACTCTAA CCAAACACCA CCCGACTGAT TTCGCTCGCC 
    TCTTCCTCAT CCCCATCAGC CATGATCCAG GCCGTGATGG TGATGAGCAC 
    GCAGGGCAAG CCGCGCCTCC TCAAGTTCTA CAGCTACCAG CCCCCCGAGA 
    AGCATCAGGA CCTCGTCCGC GGCGTCTTCC AGTTGTTGTC TGCAAGGCCG 
    GACAGTGTCA GCAATTTCGT CAAGGTTGAT GCAATCTTTG GACCGGGAGC 
    GAAATTGGTC TACAAACATT TGGCCACATT GTACTTTGTT TTTGTCTTTG 
    ATAGCTCTGA AAATGAACTT GCGGTGCTTG ATCTTGTACA AGTTTTTGTT 
    GAAACATTGG ACAGATGCTT CAAGAATGTG TGTGAGCTTG ACATCGTATT 
    TAACTTCAAC AAGCTGCATA CAATTTTAGA TGAAATGATA CTTGGGGGAC 
    AAGTGATTGA AACAAGTTCA GAGCAAATAA TGAGATCTGT CGAAGAGATT 
    GCAAGGCTGG AGAAACAGTC AAACACAACC AGCCTCATAC CGAAGTCGAT 
    TTCAGAGCGT TTCAGCCGTT GAGCCGTGAG AGCTTCACTC ATGTTATGGA 
    CAGAAACTTT GAATGCGTGA GCAGAAGAAA TCAGATTGCA TTTTTCTCCA 
    GTCGCGTTGC GATTCTCTCA AGTCGCGAGC ATCTACCATT TGACATGAAT 
    ATGAGAGCTT GTAGCCATCG TGAATATCTC TGTGTATCCC GCATGAAATT 
    GAATATGTGA CCTGAAACGT GAATTCTTCA GTACTATCTG GTTTGCTTGC 
    CGATTGCCAG TTGAGGCATC GTGTCTCCTA GACAAGGAAA ATCATACTAG 
    CCTGTTTCTC CTTCGGCTGA TGATATCTGT GCTGTTTTTG ATAGAATGTT 
    GTTCTTGGAA AATTGCGAAG GCGTTGTGTT TTCTTCTG

    Gene models with high sequence identity

    1. AT3G50860.1 [+] show detail - Clathrin adaptor complex small chain family protein
      E-value: 5e-62; Score: 235.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Gene3D no description 3.2e-43
    HMMPanther ADAPTOR-RELATED PROTEIN COMPLEX 3 4.3e-77
    HMMPanther CLATHRIN COAT ASSEMBLY PROTEIN 4.3e-77
    HMMPIR Adaptor protein complex, sigma subunit 6.3e-73
    HMMPfam Clat_adaptor_s 3.1e-48
    superfamily Longin-like 9.7e-43
    PatternScan Clathrin adaptor, sigma subunit/coatomer, zeta subunit 0

    See the detailed result >

    AT3G50860.1

    Model type
    Protein coding
    Short Description
    Clathrin adaptor complex small chain family protein
    Computational Description
    Clathrin adaptor complex small chain family protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport, protein transport; LOCATED IN: membrane coat, clathrin vesicle coat; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adaptor protein complex, sigma subunit (InterPro:IPR016635), Clathrin adaptor, sigma subunit/coatomer, zeta subunit (InterPro:IPR000804), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT2G19790.1); Has 2004 Blast hits to 2002 proteins in 250 species: Archae - 0; Bacteria - 0; Metazoa - 926; Fungi - 430; Plants - 303; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR