K18319

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18319

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18319

Determination of introduced cDNA(s)

  • J013105L14 - Rice Full-length cDNAs - Original: J013105L14

    full reading [+] show sequence

    Nucleotide sequence: J013105L14 - full reading
    GTGTGCCTCT CTCTCTTATT CTTCTCTTCG ACCGTTTCTT CGCCGACAAG 
    AAGAAGAAGG CTCCCCGCGG CTGCGGCGGC GGCGGCGACC AGCCCTTCCC
    CTTCTCCTGC TTCGACAGTT CGCCGCCATG GCCACTCGGT TTCTGCCTCT
    GGTGCGCCGC GGCCTTGCCG GCGTCCTGAA TCAATCGCCC GCGCCCGCGT
    CCACCCGAGG ATTCTTGTTT CCTGCACCTG TGACTGCTGG CATAAGATCT
    CTGCAAACTA TCATGGAAGC AAGCAATAAT GCTTCAGATG ACCGTAACCA
    GGACATAGAG GATTCCAAAA CCGACACCGT GCCAGCTACG GTCCCTTCAT
    CGGATTCCGG CTTCAAAGTT AGAGATACAT CAAACTTGAA GATCTCACCG
    AGACACGACC TCGCCATGAT CTTTACGTGC AAGGTTTGCG AGACCAGGTC
    TATGAAGATG GCGAGCAAGG AATCATATGA GAAAGGAGTG GTGGTCGCTC
    GTTGCGGCGG CTGCAATAAT TTCCACCTGA TCGCGGATAG GCTTGGCTGG
    TTTGGGGAGC CAGGAAGCAT CGAAGACTTT CTAGCCGAAC AAGGAGAGGA
    GGTGAAGAAA GGCTCAACAG ATACTCTTAA CTTCACTCTT GAGGACTTGG
    TTGGGTCTCA GGCTAATGAT AAGGGCCCTT CTGATAAAAA ATAGATTTCT
    CTTCAGTATG GCTTTGGGTC AAGACAACTT AAAAAAGGTT AACTCCTAAG
    GAAATCCACA AGTTTTTTAC TCGATATCAT GACTTCTCAA GGTGGAGTAG
    TCCAACTTTT TGCACTTGTT AGTTCTGATG TTATTGCAGT GTAATTGTCA
    ATTCTCAACC TTGTGGCTAA GTCCACCGTG TGGCTTTGGT AAATTTATTG
    TAGTGGACAC GACCCGATTA TGTACTAGGC TGTGTGTCAT AGTTTTGTGA
    TGTTCTTGAC AAAAGTAACA AAACTAATTA TGGAAATGTT TCCCTTTGAA
    TC

    Gene models with high sequence identity

    1. AT3G54826.1 [+] show detail - Zim17-type zinc finger protein
      E-value: 4e-41; Score: 165.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther UNCHARACTERIZED 3.1e-27
    HMMPanther Zinc finger, Zim17-type 3.1e-27
    HMMPfam Zinc finger, Zim17-type 2.1e-26

    See the detailed result >

    AT3G54826.1

    Model type
    Protein coding
    Short Description
    Zim17-type zinc finger protein
    Computational Description
    Zim17-type zinc finger protein; CONTAINS InterPro DOMAIN/s: Zinc finger, Zim17-type (InterPro:IPR007853); Has 403 Blast hits to 403 proteins in 183 species: Archae - 0; Bacteria - 0; Metazoa - 114; Fungi - 127; Plants - 101; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR