K18322

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18322

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18322

Determination of introduced cDNA(s)

  • J013040E19 - Rice Full-length cDNAs - Original: J013040E19

    full reading [+] show sequence

    Nucleotide sequence: J013040E19 - full reading 
    GCTCTCCTCC TCGTGGCCAT GACCATGGAA GCCTCCATGT CCAGGACAGT 
    GTCCATGCTC TTCTCCGCCA GGAGGTGCAT CGTCGCCAGC GCCGCCAAGG 
    ACATCGAGAT AGCACAAGGA GGAAGAAGGA GAAGAAGCAA CGATGTGAAG 
    CAGCAGCGAG GGTCACACGG CCAGCTCGCC GTGGCCGCGG CGACGACGGC 
    GGCGGCCATG ACCGGCCAAT GCCACTGCTG CTGCTGCTGC TGCTGCACCG 
    GAGCGTCAGT GGCAGGAGGT GGCGGAGTGG GTGTGCAGGG CGGTGGCGGT 
    GGTAGGGGAG CTGGACCCAG CGACGGCGAA GGCGGCGATC GGGGTGGCCG 
    GGCCGGCGCT GTCGGCGTTC GGGTTCCTGT TCATCGCCCG GATCGTGATG 
    TCGTGGTACC CGAGGCTCCC CGTGAGGGAG TTCCCCTACG TGGTGGCGTA 
    CGCGCCGACG GAGCCGCTCC TCGCCGTGAC GAGGAAGGTG ATCCCGCCGC 
    TCGGCGGCGT CGACGTCACG CCGGTGGTGT GGTTCGGCCT CGTCAGCTTC 
    GCCAGCGAGA TCCTCGTCGG CCCACAGGGA TTGCTCGTGC TCCTCTCTCA 
    GCAAAAGCCT TAGCAAACTC TGTTTCGTTC GTTCGTTTCC ATGTGAAAAG 
    TGAAGCAAAT TAATACGCTG TGATTCGGAC TTT

    Gene models with high sequence identity

    1. AT5G36120.1 [+] show detail - cofactor assembly, complex C (B6F)
      E-value: 1e-43; Score: 173.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G36120.1

    Model type
    Protein coding
    Short Description
    cofactor assembly, complex C (B6F)
    Computational Description
    "cofactor assembly, complex C (B6F)" (CCB3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cytochrome b6f complex assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function YGGT (InterPro:IPR003425); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR