K18325

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	low brightness (PATO:0000327) (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18325

Determination of introduced cDNA(s)

J023065M17 - Rice Full-length cDNAs - Original: J023065M17

full reading [+] show sequence

GGATTTCGCG AGGTCTTCGC TTCGTCTCCG CCCCACACCC CCAAACCCAC 
AGCCACGACG CGGCCGCAAT GGCGGAGCCC GAGTCCTCCA CGGCCGCGGC 
CGGCGGCAGC CGCCTCCGCA ACGCCTGCGG GGGCGTGCTG TGCGCCTTCA 
CCCTCCTCCT CATCGGCGTC CTCGCGTTCT CGATCCGCCT CTTCTCCGTG 
ATTAAGTACG AGAGCGTGAT CCACGAGTTC GACCCCTACT TCAACTTCCG 
CGTCACTCAG TTTTTGTCGA AGAATGGGAT CTACGAGTTC TGGAACTGGT 
TTGATGACAG GACATGGTAT CCCCTTGGCC GTGTGATTGG CGGCACTGTG 
TATCCTGGTT TGACATTGAC AGCTGGAACC ATTTGGTGGT TGCTAAATTC 
TCTAAACATT CCGTTGTCAG TGGAGACTGT TTGTGTGTTC ACTGCTCCAA 
TATTCTCAGC AAACGCTTCC TGGGCTACTT ACCTTTTAAC AAAGGAAGCC 
AAAGGCACTG GGGCTGGATT GATGGCAGCA GCTATTTTGG CAATGGTTCC 
CTCATACATC TCAAGATCCG TTGCAGGAAG CTATGATAAT GAAGCCGTAG 
CAATATTTGC TTTGATATTC ACATTTTATC TATATGTAAA GACACTGAAC 
ACAGGATCAC TCTTTTATGC AACGCTCAAT GCTCTCTCAT ATTTCTACAT 
GGTCTGTTCT TGGGGAGGTT ACACATTCAT CATCAACCTT ATTCCAATTC 
ATGTACTGTT GTGCATTGTC ACTGGTCGTT ATTCTTCACG GCTTTACATT 
GCTTATGCTC CCCTTGTTAT ACTGGGAACA CTTCTGGCAG CCTTAGTACC 
CGTGGTTGGT TTTAATGCAG TGATGACGTC TGAGCACTTT GCATCATTTC 
TGGTGTTCAT AATCCTTCAT GTGGTTGCTC TTGTGTATTA CATAAAAGGA 
CTTCTAACTC CCAGGCTGTT CAAAGTAGCT ATGACTCTTG TCATAACAGT 
TGGCTTGGCT GTTTGTTTTG CAGTAATAGC TATACTCATC GCTTTGGTGG 
CATCTAGCCC CACAAAAGGA TGGAGTGGGC GCAGTTTGAG TCTACTTGAT 
CCAACCTATG CAAGCAAGTA CATCCCTATT ATTGCTAGTG TCAGCGAACA 
TCAACCCCCT ACCTGGCCCT CCTATTTCAT GGATATCAAC GTGTTGGCCT 
TCTTGATTCC TGCTGGGATC ATTTCATGCT TCTTGCCTTT ATCTGATGCA 
AGCTCCTTCG TGGTCTTGTA CTTGGTCACC GCAGTATATT TTTCTGGAGT 
AATGGTGCGG CTTATGCTTG TCCTTGCTCC TGCTGCGTGC ATTTTATCTG 
GAATCGCTCT TTCTGAGGCT TTCGACGTCC TCACAAGATC CGTTAAATAT 
CAGCTATCAA AATTATTTGA TGACAGCCCT GCTGCTTCAG GGGATAGTAG 
TGCAGAGAGT TCTAGCGCTA GTACTGTCTC CACAAATTCA GCAAAAAATG 
AGACTAGACC TGAAAAAACT GAAACAGCCC CAAAGG

Gene models with high sequence identity

AT5G19690.1 [+] show detail - staurosporin and temperature sensitive 3-like A
E-value: 0; Score: 733.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Oligosaccharyl transferase, STT3 subunit	2.4e-91
HMMPanther	OLIGOSACCHARYL TRANSFERASE	4.6e-183
HMMPanther	60S RIBOSOMAL PROTEIN L35	4.6e-183

See the detailed result >

AT5G19690.1

Model type: Protein coding
Short Description: staurosporin and temperature sensitive 3-like A
Curator Summary: encodes an oligosaccharyl transferase involved response to high salt. Mutants are hypersensitive to high salt conditions
Computational Description: staurosporin and temperature sensitive 3-like A (STT3A); FUNCTIONS IN: oligosaccharyl transferase activity; INVOLVED IN: response to salt stress; LOCATED IN: endoplasmic reticulum, plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligosaccharyl transferase, STT3 subunit (InterPro:IPR003674); BEST Arabidopsis thaliana protein match is: staurosporin and temperature sensitive 3-like b (TAIR:AT1G34130.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR