K18341

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18341

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18341

Determination of introduced cDNA(s)

  • J013120F23 - Rice Full-length cDNAs - Original: J013120F23

    full reading [+] show sequence

    Nucleotide sequence: J013120F23 - full reading
    GAACGCCGAC TGCTCCTTGG AGAGTCGCAG CCTCCCTTCT CCTCTGCTCG 
    CCCCGCCGCC GCCGCCGTCT CCGCGCCACC GCCGCCCCCG AGATGGCCCC
    GAAGAAGGAC AAGGCCCCGC CGCCGTCGTC GAAGCCGGCC AAGTCCGGCG
    GTGGCAAGCA GAAGAAGAAG AAGTGGAGCA AGGGAAAGCA AAAGGAGAAG
    GTGAACAACT CGGTGCTGTT CGACCAGGCC ACCTACGACA AGCTGCTCTC
    CGAGGTGCCC AAGTACAAGC AGATCACCCC CTCCGTTCTC TCTGAGAGAC
    TCAGGATCAA CGGGTCCCTG GCTCGTAGGG CCATCAATGA TTTAATGACA
    CGGGGCCTAA TCCGCATGGT CTCGGTTCAC TCAAGCCAGC AGATCTACAC
    CAGGGCAACC AACACCTAAG TGTGAGGGTG ACATGCATCT TTGTTTGCCC
    TGAATGTGTA CGGGGGGCTT GCCTACTCTA GAACAGCTGT TACCTTTGTC
    GAGTTTGCTA ATGTTATGTT AAATGAGCTA CTTGTGATGG TCAGCATCTC
    TATATGGCTG AAACATTTCA GAGATTTTGG TTATTAGTTG AGTACTGTTC
    TTGTTTGCCC TATATAACTT TTTCCGCCC

    Gene models with high sequence identity

    1. AT2G21580.2 [+] show detail - Ribosomal protein S25 family protein
      E-value: 2e-27; Score: 119.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ribosomal protein S25 1.4e-46
    BlastProDom Ribosomal protein S25 9e-33
    HMMPanther SUBFAMILY NOT NAMED 1.6e-65
    HMMPanther Ribosomal protein S25 1.6e-65

    See the detailed result >

    AT2G21580.2

    Model type
    Protein coding
    Short Description
    Ribosomal protein S25 family protein
    Computational Description
    Ribosomal protein S25 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S25 (InterPro:IPR004977); BEST Arabidopsis thaliana protein match is: Ribosomal protein S25 family protein (TAIR:AT4G39200.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR