K18344

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18344

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18344

Determination of introduced cDNA(s)

  • J033032F05 - Rice Full-length cDNAs - Original: J033032F05

    full reading [+] show sequence

    Nucleotide sequence: J033032F05 - full reading 
    GATTCCTCTT CGTCTCCAAA CCCTTCCCAA AACCCTACTC CGCGCACGCG 
    CCTCTCCTTC TAGAACCTTC TGGAACCCTC GCCCCCGCGA AGGCGGCGCC 
    GCCGCCGAGA TGGCCTCCTC CCCCTCCGCC GTCGTCCTGC AGGCCGCCCT 
    CGACGGCGAC CTCCACCTCC TGTGTGAAAT GGCCAAGAAG TTGGACCTGC 
    GGGGATTCAA GGACATGAAT GGGCGAAATG CGCTTCACTT GGCTGCAAGC 
    TATGGGCATC TGGAGATCTG CAAGTTCCTG GTGGAGGAAT CGGGCCTTGA 
    TGTCAACTCA GGCTCTCACA GAGGTGAGAC ACCAATACTT CTCGCCGCAT 
    GTGACGGGGA CATTAATGTT TTAATATACC TTCTTGATCA TGGTGGTGAC 
    CCAGCCATAC CTAACGCGGG GGGCTTCATG CCGCTGCACT ACGCAGCAGA 
    GTACGGGCAT GTTGATGTTG TGAGACTATT GCTGTCCAAA GGAGTTCATG 
    TGGATCCTCT GAATTATAGT GGGGCCCCGC TGCACTTGGC TACCGCAAAT 
    GACCATGATC AGGTTGCGAA GGTTCTGCTT GAGCATGGTG CTGATCCCAA 
    CAGAGTTGTC AACCATGTCC TTTCACCACT CGTTGTTGCT TGCTGCAGCC 
    ACTCCTTGAA ATGCATGAAG TTACTGATCA AGGCTGGTGC TGATGTGAAT 
    GATAGAAGTT CTACTGGACC AAGAACGACC CCTTTAGTGC TTGCAGTTGA 
    TGATGGATCA GCCGATATTG TCAAAATCTT GCTAGAGGCT GGAGCTGACC 
    CTAACATTCG TAACGAGTGG GAGGATTCCT ATCATGATGG CAGCAGCTCG 
    TGGTCAACGA GAGCTTGTTG AAATTCTGTT TCCTAGGACA AAACCAATTC 
    CATGTCTGCC AGATTGGAGT GTTGATGGGA TAATTAGAAC TATGAGATTC 
    ACACGTACCG AACCTGAGGA TGCAGTTCCT GTGGAAATAC TAGTATCTGA 
    TTCGAAGTTA AATGCCAAGG AAGCATTTGC AGAGGGTGAA TACATTACAG 
    CAATCTACTT CTACACCAAG GCACTGGAAA AAGCCCCACT TGATGCCACC 
    TTGTTCGCCA ACCGCAGCCT CTGCTGGCTG CGGCTGCGAG AAGGAGACGT 
    CGCTCTATTG GATGCGCGAC GCTGCAAAGC CCTGCGCCCT GGTTGGTCCA 
    AGGCATGGTA CCGTGAGGGC GCGGCCCTCA GTCTCCTGAA GAACTACAGA 
    GAAGCGGCGG CGGCTTTCAC GGAAGCGCTG AAACTTGACC CTGAGAACTA 
    CGAGATCAAG ATCGCGTTAA GAGAGGCGTT GGAGTGTCGG AAGAGAGCTG 
    CACGCTCTGA AGAAGATAAG AACCCTTGAG CTGCTGCTGC TGCTGCATCA 
    GTGCATCACC CTTTTGACCT CACCTTTCAG ACTGCCACAT CTCTGATCTC 
    ACATTCTCTC TACGTGTAAC TACCAACGGC CTGTTTCCCA AACTATCTAA 
    ACTGTTTAGC TGATCACCAT GCATCTGTGT CCTTTGGTCG AAAAAAAAAA 
    CGTAGTAACT AGGAGTAGTT CGCTGGGAAG GGACATCCCT TGAGAGATCA 
    AAATAGTTTC CTGTTAGTTT CCTGTAGTTT GATAGATTAT TGTCGATACA 
    TATTGCAGCT GCACTTGTCT TCCCTTTGTG TGCGACTCTA ATGCAAGCGC 
    AGACTGGCAG CATGATATTT GTATATGATA TATGTGAAGT CCGGCAGTTT 
    CAGTATTC

    Gene models with high sequence identity

    1. AT3G04710.3 [+] show detail - ankyrin repeat family protein
      E-value: 8e-77; Score: 137.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ANKYRIN REPEAT-CONTAINING 1e-34
    HMMPanther TETRATRICOPEPTIDE REPEAT PROTEIN 3 (TPR REPEA 1.9e-26
    HMMPanther TPR REPEAT CONTAINING PROTEIN 1.9e-26
    HMMPfam Ankyrin repeat 0.00000075
    HMMPfam Ankyrin repeat 0.000052
    HMMPfam Ankyrin repeat 0.000000029
    HMMPfam Ankyrin repeat 0.00000095
    HMMPfam Ankyrin repeat 0.000046
    HMMPfam Ankyrin repeat 0.00000011
    HMMPfam Tetratricopeptide TPR-1 0.0000000046
    FPrintScan Ankyrin repeat, sub-type 0.0000000038
    FPrintScan Ankyrin repeat, sub-type 0.0000000038
    superfamily Ankyrin repeat-containing domain 5.3e-61
    superfamily TPR-like 3.2e-23
    ProfileScan Ankyrin repeat 10.072
    ProfileScan Ankyrin repeat 10.553
    ProfileScan Ankyrin repeat 13.384
    ProfileScan Ankyrin repeat 11.194
    ProfileScan Ankyrin repeat 8.95
    ProfileScan Ankyrin repeat 12.636
    ProfileScan Ankyrin repeat-containing domain 53.611
    ProfileScan Tetratricopeptide repeat 12.302
    ProfileScan Tetratricopeptide repeat-containing 15.829
    HMMSmart Ankyrin repeat 0.0000063
    HMMSmart Ankyrin repeat 0.00057
    HMMSmart Ankyrin repeat 0.00013
    HMMSmart Ankyrin repeat 0.025
    HMMSmart Ankyrin repeat 0.022
    HMMSmart Ankyrin repeat 0.0072
    HMMSmart Tetratricopeptide repeat 76
    HMMSmart Tetratricopeptide repeat 0.00000085
    Gene3D Ankyrin repeat-containing domain 1.3e-50
    Gene3D Tetratricopeptide-like helical 1.4e-25

    See the detailed result >

    AT3G04710.3

    Model type
    Protein coding
    Short Description
    ankyrin repeat family protein
    Computational Description
    ankyrin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881), Tetratricopeptide-like helical (InterPro:IPR011990), Ankyrin repeat-containing domain (InterPro:IPR020683), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1685) (TAIR:AT3G04700.1).
    Link
    InterPro Scan - TAIR