K18346

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) increased width (PATO:0000600) (Rosette leaf::Shape::wide) abnormal (PATO:0000460) (Rosette leaf::Others)
	sporophyte vegetative stage (PO:0007134)	decreased speed (PATO:0000304) (Adult plant::Growth::slow)
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short)
	stem (PO:0009047)	increased thickness (PATO:0000591) (Stem::Shape::thick)
T2
	cauline leaf (PO:0000013)	abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) abnormal (PATO:0000460) (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18346

Determination of introduced cDNA(s)

J023036O11 - Rice Full-length cDNAs - Original: J023036O11

full reading [+] show sequence

GGCATCCTCT GCGTCTCTCC CTCCTCCCTC TGCAGCGCCG AGCCGGAGGA 
ATCCTGACCG GAGGTCGGCC TCGCCCTCCC CTCCTCGCGC GCGCGCCGCC 
GCCGCCGGGA AGGCCGGCTG GCGAGGTAGT CGAAAAATAT CGCCTCTGAA 
GGTCAGCACT GAGGCATGGG GGAGTGCAGT GAGCACAGGT GTTGGGACGA 
GCTACTACCG GACGCACTGG GCCTCATCTT TCGCAAACTC TCACTCAAGG 
ATGTGCTCAC CGTGGTGCCG CGGGTTTGCA AATCCTGGGG GCGGGTGGTT 
GCAGGGCCTT ACTGCTGGCA GGAGATCGAC ATCCAGGAGT GGAGCCAGCA 
GCAGAGCAAG CCGGACCAGC TCAAGCGCAT GGTTCGCATG CTCGTCGCCC 
GAAGCGGCGG CTCGTTCCAC CGCATTAGCG TGTCCGGCCT GCCTGGCGAT 
CCATTGTTCA CCTTCATTGG GGACCATGCA CGGTCACTTA AAACCATGGA 
GCTTCCAAGG AGTGATATCA GCGACTCCTT AGTGGAAAAT GTTGCGCCAA 
GATTGTCCAA CGTTACATTC TTGGACATAA GCAGCTGTAC TAAGATCGGT 
GCTCGTGCTC TAGAAGCATT CGGCAAGCAT TGTAAATCCC TGATCGGACT 
TCGGCGAGTC ATGCACCCTA CAGATGTTGT CGGTAGGGCC AGTCAACATG 
ATGAGGCTCG TGCTATTGCT TGCAATATGC CAAAGCTCCG TCATCTTGAG 
ATAGGGTACA TGCTCATTGC AACGAAGGCT GTTGTTGAGA TTGCCTCTCA 
GTGTCATGAT CTCAAATTCT TAGATCTGCG TGGCTGCTGG AATGTTGACG 
ATAAACTATT GCAAGAGAGC TATCCTGGGC TGAAAGTCGT TGGCCCCTAT 
GTGGACGACT GCTATGAGAA CAGCTTCTGG GAGGAGTGTT CCGATGACTC 
GGATGATTCC ATCTATTGGG AGCTCATGGA TGATGATTAT TATGCGGCGG 
GGAGCGATGA CGAGGGCATA TGGGACGATG GTCAAGGTCT TGAGGGCTTA 
GAAGTAAGGT TTTATGGTGG TGGATTTAGT GAAAGCCATG CTGGTTTTGA 
TTGGCCGCCA TCTCCATGAA AGCTGCATCA AGATCTTCAG AAAAGTGCCT 
GTGTATTCCT GCTGCTTCCT CTTATGTGCT TCAAGTTTTA AACATCAGCT 
TCCTTAGTAC TAGTATGTGC TTGTATTTGT GTCATCCCCT AGCTTGCAGA 
TATTTGAAGC CAACTATCTG GTAGTATAAA ATGTTTGGTG TTTATACATA 
AAAAATAGCA ACATGGTCTG GTAGTACTGA AACAATGTTG CTACAAATTT 
GTTTCAGTAC TAGTAATTTA TTTCAGAGGT TTTCCATGCG CCTGTAATCC 
TGTACTAGTT CTCTTTTATA CTGCGGTTCT ATGACTTCTA CT

Gene models with high sequence identity

AT4G08980.5 [+] show detail - F-BOX WITH WD-40 2
E-value: 4e-81; Score: 299.00

InterPro Scan Digest

Program	Description	E-value
superfamily	RNI-like	1.9e-16
HMMPanther	N7-RELATED PROTEIN	5e-37
HMMPanther	F-BOX/LEUCINE RICH REPEAT PROTEIN	5e-37
Gene3D	no description	7.8e-36

See the detailed result >

AT4G08980.5

Model type: Protein coding
Short Description: F-BOX WITH WD-40 2
Curator Summary: Encodes an F-box gene that is a novel negative regulator of AGO1 protein levels and may play a role in ABA signalling and/or response.
Computational Description: F-BOX WITH WD-40 2 (FBW2); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process, posttranscriptional regulation of gene expression; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT4G05460.1); Has 1165 Blast hits to 1048 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 539; Fungi - 16; Plants - 571; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Link: InterPro Scan - TAIR