K18349

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18349

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18349

Determination of introduced cDNA(s)

  • J013100B15 - Rice Full-length cDNAs - Original: J013100B15

    full reading [+] show sequence

    Nucleotide sequence: J013100B15 - full reading
    GATCTTGTGA CGCGCCAACC GCGTCGCTCG CGAGCAGCGC AGCAGCCAGC 
    CATGGCGGTG GCGGTGGCGG CGTCGCTCTC GACCCCGGCG CCATCGCCGG
    CGGCCGGGGG GAGGGGCCGG AGGAGGGTGA ACGTGGCGGT GGCGTCCCTG
    CGGCGGGCGG CGGCGGGAGG TGGCTCGAGC TGGCGGAGCG AGCGGCGGCT
    CATGTCGGAG CTGGAGCGCA CGGTGACGCC CGGCGCGGCG GAGCGCGTCA
    TCCGCAGCTA CGTCGCCTCC AAGTCGGAGC GCGCCGCCCT CGCCGCGCTC
    TCCCGCCTGC TCATGGACTC CGACCCCTTC GCCATCCCGT TCTACGAGGT
    GGTCACCCAG GCGCGGTGGT TCAAGTGGAG CTCCATCCAC GCCGCCGCCG
    TCGCCGCGCT GCTCGAGAGC AATGGCAGCG CGGAGGAATC AAGATCCCTC
    ATCTCCGACT CCATCTCGCG CCTCCACTCC ACCTCCTCCT CCTCCGAGGA
    GGTGTCCCTC TTCTACTGCG ACCTCATGGC GGCCTTCTCC TCCCGCGGGA
    TGCGAGACCG GGCGATGGAT TTCTACTCCC AGCTGCGAGC CTCGCCGCCG
    CTGTCCGGGA AGAAGACCTA CACGGCGATG ATAAAATCTC TGTGCCTGAT
    GGGCCTCGCC GGCGAGGCGG AGGCGGCGCT GAGGGAGATG GCGTCTCGGG
    GGCACCAGCC GGAGGCGTTC CAGTTCGGAT TGGTGGCGAA GTGCTACGGC
    AAGGCGGGAT CCATGGCCGA GATGGAGAGG GTGATCTCGT CCATGTCCGA
    CGCCGGCATC CGCCTCGGCA CCGGCGCGGC GAACATCGTG CTCTCGTGCT
    ACACCTCCTG CCGTGACCAT TCCAGGATGC TGGCATGGCT GAGGAGGATG
    AGGAAGCTGC GGATTGCGCC GACGACGAAG GCCTTCAACT TTGTGCTCAA
    CTCATGCCCA ACAGTAGCTT CGATGGCTCA AGAATTGGGG GAATCACTGC
    CATTGTCAAC GGCTGAGTTG GTCAAGAAGC TCAGGTCTGC ATCTCAATGG
    CCAGCAGAAG CTGAGCTGGT GCAGGAGCTC CTGACATCCT CTTCGGTGCT
    CGACAAGGCG ATGGATTGGT CGGAGTCGGA GGTGAAGCTG AACCTCCATG
    GATTCAGCAC AATTGCAGCC TATGTTTTGA TTTTGCAGTG GGTGGATGCG
    ATGAAGGCGC GCCGCGCATT GCCATTGGAG GTGTCAGTGG TGTGTGGCAT
    TGGCAAGCAC AGCGATGTCA GAGGTGAGCC CAAGGTGAGG GAGCTGGCTC
    AGGAGGTTCT GAGCAGGATG GGGAGCCCCC TGAGGCTGTC CATGAGGAAC
    AAAGGCCGGC TTGTCGCCAA GCGCGACAGG GTGAAGCAAT GGCTGGCCAC
    TGACTGGAGC TCTCCGGTGG ATGAGGAGAG CACAGATCAA TCACCTAATG
    GGGACAACCA GCAACCATTT TTACTTACAC TCATGAGAAA ACTAGGACAG
    GTTCTGTCAC CATTTCTGCA GTTCTCAAAG GGTAAAGCAT AAGAGAAGCA
    CCTCTCTTAT GTAGGTTTTT CAGATAGTTT GGTCTTTGGA TAGTTCAGCA
    TCTTTGCCAT GCTGTAGATT GATACAAGCA TTGTCTTGGT CTAGTGAATC
    CTAAGTTCTA GTTCTGATGC CGAAATGCTA TGCGTCGGCC AGCTGCTTGA
    AGGTTATGGG ACTGACAAAC CGTGCTGCCC CGTCATAGAA GGCAAGGCCT
    ACAATCTTGG AGGTGGCCTG GGTAGGGTGG AGGAGATCCC AGAAGAGATA
    TCTGCTACGG TCAGCGCAGC AGCTGGAGCT GGGGGTACAG GCTTCCTCGG
    CGTTGAACTT GCCACCACCA CCACAGCATG CACTCTTCAC CTCTACAAAC
    CCTGAAATCA ATCAGCAAGT CTGTGAGATC TCAGATATAG CTGAAAAGTA
    GACGGTTACA ATTCAATTCA TGCTAAGTAG AACTGTGACA ATGTTTGAGG
    TGTGAGTTCC AGGTCATATT ACTCTTTGCT TAAACTGAGG TAACTTACCA
    GCAGCTTGTG GATTTTCAAT TAGGCTGGAG ATAAGTTCAT AGGAGCTGGC
    AATGGAGTAC TTCATTCCCT GCATTTCGGA GCTGAGGTCA CGGAACAGGT
    CCCGGATTTC GCCGTTCAGT CTCTTGGCCA ACTGGTTTAG CGGTTCGAAG
    CACTCTCCGG TCGGGTTCTG ACTTCTCAAA TATGGGCAGC ACCCGAGTAA
    TGGCACATTG ATCACTGCAA ACTTCCTTGC TCCTAAATTG TATAATGTCT
    ACAAGAATAC TTCAACAGTT ACTAACTTAA TAAAACATAA TTTGTTTGCC
    AGC

    Gene models with high sequence identity

    1. AT2G17033.2 [+] show detail - pentatricopeptide (PPR) repeat-containing protein
      E-value: 4e-46; Score: 183.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Smr protein/MutS2 C-terminal 0.000000001
    HMMTigr Pentatricopeptide repeat 0.00000051
    HMMTigr Pentatricopeptide repeat 0.099
    HMMTigr Pentatricopeptide repeat 0.016
    HMMPanther PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2.7e-21
    ProfileScan Smr protein/MutS2 C-terminal 9.743
    ProfileScan Pentatricopeptide repeat 5.722
    ProfileScan Pentatricopeptide repeat 10.402
    ProfileScan Pentatricopeptide repeat 7.837
    ProfileScan Pentatricopeptide repeat 7.311
    HMMPfam Pentatricopeptide repeat 0.000097
    HMMPfam Pentatricopeptide repeat 0.44
    HMMPfam Lipase, GDSL 0.0000069

    See the detailed result >

    AT2G17033.2

    Model type
    Protein coding
    Short Description
    pentatricopeptide (PPR) repeat-containing protein
    Computational Description
    pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Smr protein/MutS2 C-terminal (InterPro:IPR002625); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G48730.1); Has 2363 Blast hits to 1770 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 2346; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR