K18349

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18349

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18349

Determination of introduced cDNA(s)

  • J013100B15 - Rice Full-length cDNAs - Original: J013100B15

    full reading [+] show sequence

    Nucleotide sequence: J013100B15 - full reading 
    GATCTTGTGA CGCGCCAACC GCGTCGCTCG CGAGCAGCGC AGCAGCCAGC 
    CATGGCGGTG GCGGTGGCGG CGTCGCTCTC GACCCCGGCG CCATCGCCGG 
    CGGCCGGGGG GAGGGGCCGG AGGAGGGTGA ACGTGGCGGT GGCGTCCCTG 
    CGGCGGGCGG CGGCGGGAGG TGGCTCGAGC TGGCGGAGCG AGCGGCGGCT 
    CATGTCGGAG CTGGAGCGCA CGGTGACGCC CGGCGCGGCG GAGCGCGTCA 
    TCCGCAGCTA CGTCGCCTCC AAGTCGGAGC GCGCCGCCCT CGCCGCGCTC 
    TCCCGCCTGC TCATGGACTC CGACCCCTTC GCCATCCCGT TCTACGAGGT 
    GGTCACCCAG GCGCGGTGGT TCAAGTGGAG CTCCATCCAC GCCGCCGCCG 
    TCGCCGCGCT GCTCGAGAGC AATGGCAGCG CGGAGGAATC AAGATCCCTC 
    ATCTCCGACT CCATCTCGCG CCTCCACTCC ACCTCCTCCT CCTCCGAGGA 
    GGTGTCCCTC TTCTACTGCG ACCTCATGGC GGCCTTCTCC TCCCGCGGGA 
    TGCGAGACCG GGCGATGGAT TTCTACTCCC AGCTGCGAGC CTCGCCGCCG 
    CTGTCCGGGA AGAAGACCTA CACGGCGATG ATAAAATCTC TGTGCCTGAT 
    GGGCCTCGCC GGCGAGGCGG AGGCGGCGCT GAGGGAGATG GCGTCTCGGG 
    GGCACCAGCC GGAGGCGTTC CAGTTCGGAT TGGTGGCGAA GTGCTACGGC 
    AAGGCGGGAT CCATGGCCGA GATGGAGAGG GTGATCTCGT CCATGTCCGA 
    CGCCGGCATC CGCCTCGGCA CCGGCGCGGC GAACATCGTG CTCTCGTGCT 
    ACACCTCCTG CCGTGACCAT TCCAGGATGC TGGCATGGCT GAGGAGGATG 
    AGGAAGCTGC GGATTGCGCC GACGACGAAG GCCTTCAACT TTGTGCTCAA 
    CTCATGCCCA ACAGTAGCTT CGATGGCTCA AGAATTGGGG GAATCACTGC 
    CATTGTCAAC GGCTGAGTTG GTCAAGAAGC TCAGGTCTGC ATCTCAATGG 
    CCAGCAGAAG CTGAGCTGGT GCAGGAGCTC CTGACATCCT CTTCGGTGCT 
    CGACAAGGCG ATGGATTGGT CGGAGTCGGA GGTGAAGCTG AACCTCCATG 
    GATTCAGCAC AATTGCAGCC TATGTTTTGA TTTTGCAGTG GGTGGATGCG 
    ATGAAGGCGC GCCGCGCATT GCCATTGGAG GTGTCAGTGG TGTGTGGCAT 
    TGGCAAGCAC AGCGATGTCA GAGGTGAGCC CAAGGTGAGG GAGCTGGCTC 
    AGGAGGTTCT GAGCAGGATG GGGAGCCCCC TGAGGCTGTC CATGAGGAAC 
    AAAGGCCGGC TTGTCGCCAA GCGCGACAGG GTGAAGCAAT GGCTGGCCAC 
    TGACTGGAGC TCTCCGGTGG ATGAGGAGAG CACAGATCAA TCACCTAATG 
    GGGACAACCA GCAACCATTT TTACTTACAC TCATGAGAAA ACTAGGACAG 
    GTTCTGTCAC CATTTCTGCA GTTCTCAAAG GGTAAAGCAT AAGAGAAGCA 
    CCTCTCTTAT GTAGGTTTTT CAGATAGTTT GGTCTTTGGA TAGTTCAGCA 
    TCTTTGCCAT GCTGTAGATT GATACAAGCA TTGTCTTGGT CTAGTGAATC 
    CTAAGTTCTA GTTCTGATGC CGAAATGCTA TGCGTCGGCC AGCTGCTTGA 
    AGGTTATGGG ACTGACAAAC CGTGCTGCCC CGTCATAGAA GGCAAGGCCT 
    ACAATCTTGG AGGTGGCCTG GGTAGGGTGG AGGAGATCCC AGAAGAGATA 
    TCTGCTACGG TCAGCGCAGC AGCTGGAGCT GGGGGTACAG GCTTCCTCGG 
    CGTTGAACTT GCCACCACCA CCACAGCATG CACTCTTCAC CTCTACAAAC 
    CCTGAAATCA ATCAGCAAGT CTGTGAGATC TCAGATATAG CTGAAAAGTA 
    GACGGTTACA ATTCAATTCA TGCTAAGTAG AACTGTGACA ATGTTTGAGG 
    TGTGAGTTCC AGGTCATATT ACTCTTTGCT TAAACTGAGG TAACTTACCA 
    GCAGCTTGTG GATTTTCAAT TAGGCTGGAG ATAAGTTCAT AGGAGCTGGC 
    AATGGAGTAC TTCATTCCCT GCATTTCGGA GCTGAGGTCA CGGAACAGGT 
    CCCGGATTTC GCCGTTCAGT CTCTTGGCCA ACTGGTTTAG CGGTTCGAAG 
    CACTCTCCGG TCGGGTTCTG ACTTCTCAAA TATGGGCAGC ACCCGAGTAA 
    TGGCACATTG ATCACTGCAA ACTTCCTTGC TCCTAAATTG TATAATGTCT 
    ACAAGAATAC TTCAACAGTT ACTAACTTAA TAAAACATAA TTTGTTTGCC 
    AGC

    Gene models with high sequence identity

    1. AT2G17033.2 [+] show detail - pentatricopeptide (PPR) repeat-containing protein
      E-value: 4e-46; Score: 183.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Smr protein/MutS2 C-terminal 1e-09
    HMMTigr Pentatricopeptide repeat 5.1e-07
    HMMTigr Pentatricopeptide repeat 0.099
    HMMTigr Pentatricopeptide repeat 0.016
    HMMPanther PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2.7e-21
    ProfileScan Smr protein/MutS2 C-terminal 9.743
    ProfileScan Pentatricopeptide repeat 5.722
    ProfileScan Pentatricopeptide repeat 10.402
    ProfileScan Pentatricopeptide repeat 7.837
    ProfileScan Pentatricopeptide repeat 7.311
    HMMPfam Pentatricopeptide repeat 9.7e-05
    HMMPfam Pentatricopeptide repeat 0.44
    HMMPfam Lipase, GDSL 6.9e-06

    See the detailed result >

    AT2G17033.2

    Model type
    Protein coding
    Short Description
    pentatricopeptide (PPR) repeat-containing protein
    Computational Description
    pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Smr protein/MutS2 C-terminal (InterPro:IPR002625); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G48730.1); Has 2363 Blast hits to 1770 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 2346; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR