K18401

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18401

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Original: K18401

Determination of introduced cDNA(s)

  • J013128A11 - Rice Full-length cDNAs - Original: J013128A11

    full reading [+] show sequence

    Nucleotide sequence: J013128A11 - full reading 
    GGGGCGACAT CGTTCTCTGT CTGTCCCGCA CTCCCGCCTT TTGCCAAAGC 
    GGCCCGCGAC GCGACACAGC GGAGAGGTGC AACTCTGCCA TCGTCGTCGC 
    TTCTCAAGGT TTATCAATAT CTCTCTCTCG GCGCGTATAG CCGTCGCGCG 
    GAGGGACGAG CCAAGGCCAC GCCGCATCCA CAGATCGAGA ATCGCGACGG 
    GGAGAGGCGA GGCACCGTGT GGGCCGCCGG GAAGACGCAC GCACGAGATG 
    GCGGCGGCGT GGCTCGTGGT GCTCCTCACC GTGCACCGGC TCCTCCACCT 
    CTCCGGCGTC TCGGCCGTCG ACCGCAGCCA GTTCCCGCCG GACTTCCTCT 
    TTGGGACCTC TTCTTCTGCT TACCAGGTTG AAGGCGGATA TTTGGAGGGT 
    AACAAAGGTC TCAGCAACTG GGATGTCTTC ACTCATAAGC AAGGTACAAT 
    TGAGGATGGA AGCAATGGCG ATACAGCTAA TGACCACTAT CACCGTTACA 
    TGGAAGATAT TGAGTTGATG CACTCCTTGG GTGTCAACTC GTACAGGTTC 
    TCCATATCAT GGGCAAGGAT TCTACCAAAG GGTCGGTTTG GAGATGTTAA 
    TCCGGATGGT GTAGCATTCT ACAACGCCCT TATTGATGGT CTTGTACAGA 
    AAGGAATACA GCCATTTGTT ACAATATGCC ACTATGATAT CCCACATGAA 
    CTGGACGAGC GATATGGTGG ATGGTTGAGT CCAGAAATCC AGAAGGACTT 
    CAGTTACTTT GCAGAAGTAT GCTTCAAGCT GTTTGGTGAC CGAATAAAAT 
    TCTGGACAAC ATTTAATCAA CCGAATTTGT CCATAAAGTT CAGTTACATG 
    GATGGATTTT ACTCTCCTGG TCGTTGTTCT GAACCATTTG GGAAGTGTGC 
    CTTAGGGAAT TCTTCAATAG AGCCATACGT AGCAGGTCAC AATATCATAC 
    TGTCGCATGC AAATGCAGTC AGCGTTTACA GAAACAAATA TCAGGGAAAA 
    CAAGGTGGTC AGATTGGAAT TGCTTTGAGC ATAACCTGGT ATGAACCATT 
    CCGGAATACC ACTATAGATC TCTTGGCGGT TAAGAGGGCT CTATCTTTCG 
    GTGCTTCATG GTTTTTAGAC CCTATACTTC TTGGTGATTA TCCCACAGAG 
    ATGCGTGAAG TCTTGGGTCA AAGCCTACCC AAGTTCACAT CAAAACAAAA 
    GAACAGACTG CAGAGCACAA AATTGGATTT TATCGGACTA AACCATTACA 
    CGACATGTTA TGTGAAGGAT TGCATCTTCT CACCGTGTGA AATTGATCCT 
    GTTAATGCAG ATGCACGAGT ATTTAGTTTA TACGAAAGGG ATGGAGTGCC 
    CATCGGTAAA GCGACAGGAG CGCCATTCTT TCATGACGTT CCACGAGGGA 
    TGGAAGAAGC AGTCACATAC TATAAACAAA GATACAACAA CACACCAACA 
    TATATCACTG AAAATGGTTA CTCCCAAGCA AGCAATAGCA ACATGACTGC 
    CAAGGATTTT ACCAACGACA CAGGAAGAAT TACCTACATT CAAGGCTACC 
    TCATTTCCTT AGCCTCGGCA ATAAGGAAAG GAGCTGATGT ACGTGGCTAC 
    TTTGTATGGT CTCTCCTTGA TGACTTCGAG TGGAATTTTG GATACACGTT 
    AAGGTTCGGG CTCTACCATG TCCACTACAA GACACTGAAG AGGACGCCAA 
    AATTGTCGGT AGATTGGTAC AGGAAGTTCC TCACGGGTTC ACTGCTGAGG 
    AGAAAGTTCA GAGATGAATC TCAGCTTCAT AAGTTTAACT CTTATTAATC 
    CATACATGCT GTTCTTCCCT TTCCATATTA CTTTATGTAA AGTCAATATG 
    TGATGCTTTA GCGTACATAT GCTTGTACTT GCATATGTTC GCAATTATCC 
    ATCCTAGACC ATATGCATAG AGTATAATAT GTACTGAATA AAAGGGACGG 
    ATTTTTGTGT GT

    Gene models with high sequence identity

    1. AT1G61820.1 [+] show detail - beta glucosidase 46
      E-value: 6e-149; Score: 525.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther BETA-GLUCOSIDASE 5e-240
    HMMPanther Glycoside hydrolase, family 1 5e-240
    superfamily Glycoside hydrolase, catalytic core 9.2e-168
    FPrintScan Glycoside hydrolase, family 1 1.6e-19
    FPrintScan Glycoside hydrolase, family 1 1.6e-19
    FPrintScan Glycoside hydrolase, family 1 1.6e-19
    FPrintScan Glycoside hydrolase, family 1 1.6e-19
    FPrintScan Glycoside hydrolase, family 1 1.6e-19
    PatternScan Glycoside hydrolase, family 1, active site 0
    Gene3D Glycoside hydrolase, subgroup, catalytic core 1.6e-160
    HMMPfam Glycoside hydrolase, family 1 5.9e-148

    See the detailed result >

    AT1G61820.1

    Model type
    Protein coding
    Short Description
    beta glucosidase 46
    Computational Description
    beta glucosidase 46 (BGLU46); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: lignin biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-glucosidase 45 (TAIR:AT1G61810.1); Has 11434 Blast hits to 11077 proteins in 1473 species: Archae - 142; Bacteria - 7926; Metazoa - 720; Fungi - 201; Plants - 1444; Viruses - 0; Other Eukaryotes - 1001 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR