K18406

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18406

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18406

Determination of introduced cDNA(s)

  • J033046F10 - Rice Full-length cDNAs - Original: J033046F10

    full reading [+] show sequence

    Nucleotide sequence: J033046F10 - full reading 
    GATCCAGAAT CAGATCCACA AGGCAGCAGC TGCAGCAGCA TCGACCATGG 
    CGATGGCGCG ATCCATCCTC CTCCTCCTCC TCCTCGCCGC CGCCGCCTCC 
    GCCTCCGCCG ACGCGCCCTT CCTCGTCGCG CACAAGAAGG TTTCGCTCTC 
    CCGCCCCAAG CCTGGCGTCG AGCGCCTCGC CGTCTCCCTC GACCTCTACA 
    ACCAGGGATC CGCAACTGCC TATGATGTGA GCATTAATGA TGATACTTGG 
    CCAAAGGAGG CATTTGAGCT TGTCTCTGGA GAGATGTCAA AGACATTGGA 
    AAGGCTTGAC CCTGGTGTCA CTGCTTCGCA TGCATTTGTC TTGGAGACCA 
    AAGTACAGGG CATGTTTCAG GTTCACCTGC GGTTATTACC TATCGTGTTC 
    CCACAAAGGC TGCGCTTCAG GAGGCCTATT CAACCCCCAT CCTTGCACTT 
    GATGTTCTTG CTGAGAGGCC TCCAGAAAAG AAGTTTGAAT GGGCTAAGAG 
    GCTTGTGGCG AAGTACGGGT CGCTGGTGTC CGTTGTTGGC TTGGTTGGAG 
    TGTTTATCTA CCTGGTTGCA AGCCCGTCAA AATCCAGCGG TGCAAAAGCA 
    AGCAAGAAGA GGCGTTGATA TACTTGCCTA CCATATATAA GGCAGTGTTT 
    GTTCTTTTTT ATTAAAAAGA GGAAGAGATG GTGGCAGGTT TTTTAGATTG 
    ATAGCGCGAG AGCTTTAAGG CTGCCGCATC CTTGAACTGT ATGAATTTTC 
    TCTGTTTGTG TTTTTGGAAG TTGAAAACCT AACCCAGAGA ATTGGAGAGT 
    AGATTTTGTA ACAGATGAAA TCTCAATGCA TCATTTTGAA GTTGCCTGAT 
    ACAGATACCT ATTCATTGCA TTTGGTAACA GATGAAATCC C

    Gene models with high sequence identity

    1. AT5G14030.4 [+] show detail - translocon-associated protein beta (TRAPB) family protein
      E-value: 2e-20; Score: 96.70

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Translocon-associated beta 1.9e-15
    HMMPfam Translocon-associated beta 1.5e-34
    HMMPanther Translocon-associated beta 1.5e-21

    See the detailed result >

    AT5G14030.4

    Model type
    Protein coding
    Short Description
    translocon-associated protein beta (TRAPB) family protein
    Computational Description
    translocon-associated protein beta (TRAPB) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translocon-associated beta (InterPro:IPR008856); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR