K18410

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18410

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Original: K18410

Determination of introduced cDNA(s)

  • J033086N17 - Rice Full-length cDNAs - Original: J033086N17

    full reading [+] show sequence

    Nucleotide sequence: J033086N17 - full reading 
    GCTTCCTTCT TCTTCCACGC CCCGCATCGC CGCCGCCGCC GGAGAGGGAG 
    AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG CGAGAGATGA AGACGATCTT 
    GGCTTCGGAG ACGATGGAGA TCCCGTCGGG GGTGACGGTG CACGTGGCGG 
    CGAAGGTGGT GACGGTGGAG GGTCCCCGTG GGAAGCTGAC GCGCAACTTC 
    AAGCACCTGA ACCTGGACTT CCAGCTGCTG GAGGTGGAGG GGGTGAGGAA 
    GCTGCAGGTG GACGCGTGGT TCGGCACCCG CCGCACCATG GCCGCCATCC 
    GCACCGCCAT CTCCCACGTC CAGAACCTCA TCACCGGCGT CACCAAGGGC 
    TACCGCTACA AGATGCGCTT CGTCTATGCC CATTTCCCCA TCAACGCCTC 
    CATCACCAAC TCCAACACCG CCATCGAGAT CAGGAACTTC CTCGGCGAGA 
    AGAAGGTGAG GAAAGTGGAC ATGCTTGAGG GTGTGACAAT TTTGCGTTCT 
    GAGAAGGTCA AGGATGAGCT GGTCCTTGAT GGCAATGATA TCGAGCTTGT 
    CTCCCGTTCT GCGGCACTGA TCAACCAGAA ATGCCACGTC AAGAACAAGG 
    ATATCAGGAA GTTCCTGGAT GGCATCTATG TCAGTGACAA GGGCACCATC 
    ACTGAGGACC AGTGAGCTGC GTTTCCTTAC TAGCTGTAGC AAAACCTGTC 
    CTAGAGAGAG TGCACAAGGA ACTTTTACTG CTCTGTTTTT GAGTCAAATT 
    ACAAGGTCAT TCGGCAATGA AATTTTGTAC TACTGGGTTA GGATGTTATT 
    ATGTAATTGG AGCATGTGCT CCTATGGTAT CCGTATTGTT TGTGAGAATG 
    TTTCTGTGCT TATTTCTCTT GATGGATCTT TTTTACACCG TTGAAAGAAC 
    CTGCAACTTG GGTT

    Gene models with high sequence identity

    1. AT1G33140.1 [+] show detail - Ribosomal protein L6 family
      E-value: 2e-75; Score: 279.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Ribosomal protein L6, alpha-beta domain 2.2e-29
    superfamily Ribosomal protein L6, alpha-beta domain 1.9e-17
    HMMPfam Ribosomal protein L6, alpha-beta domain 4.9e-12
    HMMPfam Ribosomal protein L6, alpha-beta domain 3.5e-14
    Gene3D Ribosomal protein L6, alpha-beta domain 6.3e-17
    Gene3D Ribosomal protein L6, alpha-beta domain 4.9e-36
    PatternScan Ribosomal protein L6, conserved site-2 0
    HMMPanther 60S RIBOSOMAL PROTEIN L9 5.4e-126
    HMMPanther Ribosomal protein L6 5.4e-126

    See the detailed result >

    AT1G33140.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L6 family
    Curator Summary
    Encodes ribosomal protein L9. Identified in a screen for enhancers of as1. as1/pgy double mutants show defects in leaf vascular patterning and adaxial cell fate. Double mutant analysis indicates pgy genes function in the same pathway as REV, KAN1 and KAN2.
    Computational Description
    PIGGYBACK2 (PGY2); FUNCTIONS IN: structural constituent of ribosome, rRNA binding; INVOLVED IN: adaxial/abaxial pattern formation, translation; LOCATED IN: cytosolic large ribosomal subunit, vacuole, large ribosomal subunit, membrane, chloroplast envelope; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein L6 (InterPro:IPR000702), Ribosomal protein L6, alpha-beta domain (InterPro:IPR020040), Ribosomal protein L6, conserved site-2 (InterPro:IPR002359); BEST Arabidopsis thaliana protein match is: Ribosomal protein L6 family (TAIR:AT1G33120.1); Has 1644 Blast hits to 1643 proteins in 495 species: Archae - 312; Bacteria - 169; Metazoa - 422; Fungi - 179; Plants - 339; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR