K18427

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18427

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)
petal (PO:0009032)
  • abnormal (PATO:0000460)
    (Flower::Shape::petal)
flower (PO:0009046)
  • abnormal (PATO:0000460)
    (Flower::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Original: K18427

Determination of introduced cDNA(s)

  • J013131F09 - Rice Full-length cDNAs - Original: J013131F09

    full reading [+] show sequence

    Nucleotide sequence: J013131F09 - full reading 
    GGTGCTCTTC TCTTCTCTTC CATTCGCCTC CGCATCCGAA GCCATGTTGG 
    ATCCACCGCC CCACCACCAC CAGCATCGGT AGCGGCGGCG GCGGAGACGG 
    TGGCGGGAGC GGGATGAAGA ACTTCCTCCG GAATCTCCAC ATCGGCGACT 
    CGGCCGGCGA TGGCGCCTCG TCGCTCGCGC CTCCTCCGCC GGTCTCCAAA 
    AAGGGCGGCG GAGGCGGTGG AGGTGGCGGT GGTGGTGGAG CGCAGCACGA 
    GCATAAGCAC GGTTCTGGGA TCTCGAGCTG GCTTAGCTCC GTGACCGGGC 
    GGCCGCAGAC GCAGCCGTCG CCATCGCCGC CGTTTGCGGC GGACGCGGTG 
    GTGGAGGCGG AGGCGGCGGC GTTGGCGTCG TCGGTGGAGG TGAGGAGGCT 
    GGAGGTCGAG GAGGAGGAGG AGAAGGCGAG GAGGGAGTCG CGGGAGGAGT 
    CGGTGAGGAA GAGGGAGATG GAGAAGGAGA AGCAGGAGGC GGAGCTGGAG 
    GAGTACCACA TGCAGCTCGC GCTGGAGATG AGCGCGCGGG AGGATCCCGA 
    GGCGACGCAG ATCGAGGTAG CCAAGCAGAT CAGTCTCGGC TCCTGCCCGC 
    TCCAGAGCTC CCCCGCCGAG GTCGTCGCCT TCCGCTACTG GAGTTTCAGT 
    GCCCTTAGCT ACGACGACAA AATCTTGGAT GGTTTCTATG ACATTTTTGT 
    CATTGGGGAC GAGCCCACAT TGCCAACCAT ACCCTCCTTG ACGGAACTGC 
    ATCAACAGCC ATTTTCACAT GCATCCAAAA CAGAAGCCGT ATTGGTCAAC 
    AGAGCACAAG ACACCAAACT TGTACAACTT GAGCAGAAGG CACTCATCAT 
    GGCTGTGGAA GTTCGCTCGA AAACTCCAGA GTTTGTTGGG CACAACCTGG 
    TCCAGAGACT AGCTACTTTA GTTTCCGACT ACATGGGTGG ACCAGTCATC 
    GATCCAGAAA GCTTTTTGTC CAAGTACCAG AATGTGAGCA GCTCTCTGAG 
    AGCTAGTATA AGAAGTGCTG TTATGCCTCT CGGTGAGTTA ACAATTGGTC 
    TGGCTCGTCA CCGTGCACTG CTTTTTAAGG TTTTGGCCGA CAGCCTCGCT 
    GTTCCTTGTC GACTAGTTAA AGGAAGACAG TACACTGGAT CGGATGATGG 
    AGCTTTGAGC ATTGTGAAAT TTAATGATGG AAGATCCAGG TACTCTTATA 
    CCTTCAGACG GTGCGGGCTT GGGTAGAGAA TTTGAAGATA GTTTATTTGC 
    AGATAGTCAC CATGTTAACA AAGATGACTG TAACACTCAG TTGGGGTCTT 
    CCTTTAGTGA AGTCTCAAGT TCTATGTATG GTTCTTTTGA GAATGAGTCA 
    CTTGAAAAAG TATCCACACC CAGCAATTTT GGGCATTCTG ATCCTTATGG 
    CATAACAACT GGCCAGACTG GCAGCCAGGG ATCAGCGGTA TCTGGTTCAT 
    TTGGGGAACT ATCAATTAGC ACAAGCACAA GTGAAAATTT GCCTGTTATT 
    CATGAATCTA GAAATACAGA CCATACCATG AGTACACAGA GCAAAGATAA 
    GTCCTCTGCA GCGAATAATT CGTCATCAAG TTCTCCTTCA TCTTCTGAGG 
    TGGGTGGTGC TCCAGCAGTA CGAAGGATGA AAGTGAAAGA TGTCTCAGAA 
    TATATGATTA GTGCTGCAAA AGAAAACCCC CAGATAGCTG AGAGGATCCA 
    TGCTGTCTTA CTTGAAAATG GAGTTGTCCC ACCACCTGAT TTGTTTTCAG 
    AAGAATCAAG GGAACAACCT AAAGACCTTA TTGTGTATGA CACATCTCTG 
    TTTCAAACTA AAGATGAAAT GATAAAGAGG ATGAATGAGC TTGAATCTAC 
    AACAAACGCT GATTTTTGTC ATGGTCCTTC GGTGCCACAT CCCCCTGGAC 
    ATGAACTCCA AACAAAGGCT GTTCCTTATC GGATTCCTCT GGATCTTAAA 
    CCTATCCAGG GGCTGGGTAC CTACCATCCC TCAGATTCCC GGAACAGTAC 
    TGGTAGTTCA CATATGTATG AACCATCTGC ACCTCCCCAG GAGGATCCAC 
    TACAACTTAT AAAACAAATG CCTGTTGCAG CAGCTGCTGT TGCAACCGCT 
    GCAGTGGTTG CATCCTCAAT GGTTGTCGCT GCAGCTAAAT CTAACAGTGA 
    TATCAAACTC GACGTGCCTG TTGCTGCTGC GGCGACTGCT GCTGCAGTTG 
    TGGCTACAAC TGCTGCTGTT AACAAGCAGT ACGAATACTT GGAACCTGGT 
    TGTCAATTGC TTAGTTTGCC AAGTTCTTCA GGGGCAAATG AATTGATCCC 
    GAAGGGTAGA CATGACTTCT GGGATAATCA GCTTGAAATT GATCATGGAC 
    AAACTAGTGT TCCCGAGAAA GAAAAAGATT TGGTTGAAGT ACCTCAGGAA 
    GCTGAAAGAG TCTCTGACAA GTCGGTTGGG ACTGAAAGCT CAAGATCTGA 
    TATTGCCCTA GATGGTGTTG CAGAGTTTGA AATCCAATGG GAAGAGATCA 
    CTCTGGGAGA ACGTGTTGGG CTAGGATCCT TTGGAGAGGT GTACAAAGGG 
    GAATGGCATG GAACAGAAGT CGCGGTGAAG AAATTCTTGC AGCAAGATAT 
    ATCAAGCGAT GCTCTGGATG AATTTAGAAC TGAGGTAACT GTCTGCAATC 
    CAAATTTATG ACTGC

    Gene models with high sequence identity

    1. AT1G73660.1 [+] show detail - protein tyrosine kinase family protein
      E-value: 2e-115; Score: 177.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Serine/threonine-protein kinase-like domain 3.4e-05
    HMMPanther ARMC3 3.4e-07
    HMMPanther BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAIN 3.4e-07
    HMMPanther MAP3K DELTA-1 PROTEIN KINASE 5.5e-27
    HMMPanther SERINE-THREONINE PROTEIN KINASE 5.5e-27
    Coil coiled-coil 0
    superfamily Protein kinase-like domain 5.2e-10
    PatternScan Protein kinase, ATP binding site 0
    Gene3D no description 8.1e-12
    ProfileScan Protein kinase, catalytic domain 8.895
    FPrintScan PRICHEXTENSN 3.3e-18
    FPrintScan PRICHEXTENSN 3.3e-18
    FPrintScan PRICHEXTENSN 3.3e-18
    FPrintScan PRICHEXTENSN 3.3e-18

    See the detailed result >

    AT1G73660.1

    Model type
    Protein coding
    Short Description
    protein tyrosine kinase family protein
    Curator Summary
    Encodes a protein with similarity to MAPKKKs. May function as a negative regulator of salt tolerance.
    Computational Description
    protein tyrosine kinase family protein; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Ubiquitin interacting motif (InterPro:IPR003903), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G18160.1); Has 126827 Blast hits to 124278 proteins in 4857 species: Archae - 98; Bacteria - 13376; Metazoa - 48156; Fungi - 11388; Plants - 33654; Viruses - 503; Other Eukaryotes - 19652 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR