K18427

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18427

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)
petal (PO:0009032)
  • abnormal (PATO:0000460)
    (Flower::Shape::petal)
flower (PO:0009046)
  • abnormal (PATO:0000460)
    (Flower::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Original: K18427

Determination of introduced cDNA(s)

  • J013131F09 - Rice Full-length cDNAs - Original: J013131F09

    full reading [+] show sequence

    Nucleotide sequence: J013131F09 - full reading
    GGTGCTCTTC TCTTCTCTTC CATTCGCCTC CGCATCCGAA GCCATGTTGG 
    ATCCACCGCC CCACCACCAC CAGCATCGGT AGCGGCGGCG GCGGAGACGG
    TGGCGGGAGC GGGATGAAGA ACTTCCTCCG GAATCTCCAC ATCGGCGACT
    CGGCCGGCGA TGGCGCCTCG TCGCTCGCGC CTCCTCCGCC GGTCTCCAAA
    AAGGGCGGCG GAGGCGGTGG AGGTGGCGGT GGTGGTGGAG CGCAGCACGA
    GCATAAGCAC GGTTCTGGGA TCTCGAGCTG GCTTAGCTCC GTGACCGGGC
    GGCCGCAGAC GCAGCCGTCG CCATCGCCGC CGTTTGCGGC GGACGCGGTG
    GTGGAGGCGG AGGCGGCGGC GTTGGCGTCG TCGGTGGAGG TGAGGAGGCT
    GGAGGTCGAG GAGGAGGAGG AGAAGGCGAG GAGGGAGTCG CGGGAGGAGT
    CGGTGAGGAA GAGGGAGATG GAGAAGGAGA AGCAGGAGGC GGAGCTGGAG
    GAGTACCACA TGCAGCTCGC GCTGGAGATG AGCGCGCGGG AGGATCCCGA
    GGCGACGCAG ATCGAGGTAG CCAAGCAGAT CAGTCTCGGC TCCTGCCCGC
    TCCAGAGCTC CCCCGCCGAG GTCGTCGCCT TCCGCTACTG GAGTTTCAGT
    GCCCTTAGCT ACGACGACAA AATCTTGGAT GGTTTCTATG ACATTTTTGT
    CATTGGGGAC GAGCCCACAT TGCCAACCAT ACCCTCCTTG ACGGAACTGC
    ATCAACAGCC ATTTTCACAT GCATCCAAAA CAGAAGCCGT ATTGGTCAAC
    AGAGCACAAG ACACCAAACT TGTACAACTT GAGCAGAAGG CACTCATCAT
    GGCTGTGGAA GTTCGCTCGA AAACTCCAGA GTTTGTTGGG CACAACCTGG
    TCCAGAGACT AGCTACTTTA GTTTCCGACT ACATGGGTGG ACCAGTCATC
    GATCCAGAAA GCTTTTTGTC CAAGTACCAG AATGTGAGCA GCTCTCTGAG
    AGCTAGTATA AGAAGTGCTG TTATGCCTCT CGGTGAGTTA ACAATTGGTC
    TGGCTCGTCA CCGTGCACTG CTTTTTAAGG TTTTGGCCGA CAGCCTCGCT
    GTTCCTTGTC GACTAGTTAA AGGAAGACAG TACACTGGAT CGGATGATGG
    AGCTTTGAGC ATTGTGAAAT TTAATGATGG AAGATCCAGG TACTCTTATA
    CCTTCAGACG GTGCGGGCTT GGGTAGAGAA TTTGAAGATA GTTTATTTGC
    AGATAGTCAC CATGTTAACA AAGATGACTG TAACACTCAG TTGGGGTCTT
    CCTTTAGTGA AGTCTCAAGT TCTATGTATG GTTCTTTTGA GAATGAGTCA
    CTTGAAAAAG TATCCACACC CAGCAATTTT GGGCATTCTG ATCCTTATGG
    CATAACAACT GGCCAGACTG GCAGCCAGGG ATCAGCGGTA TCTGGTTCAT
    TTGGGGAACT ATCAATTAGC ACAAGCACAA GTGAAAATTT GCCTGTTATT
    CATGAATCTA GAAATACAGA CCATACCATG AGTACACAGA GCAAAGATAA
    GTCCTCTGCA GCGAATAATT CGTCATCAAG TTCTCCTTCA TCTTCTGAGG
    TGGGTGGTGC TCCAGCAGTA CGAAGGATGA AAGTGAAAGA TGTCTCAGAA
    TATATGATTA GTGCTGCAAA AGAAAACCCC CAGATAGCTG AGAGGATCCA
    TGCTGTCTTA CTTGAAAATG GAGTTGTCCC ACCACCTGAT TTGTTTTCAG
    AAGAATCAAG GGAACAACCT AAAGACCTTA TTGTGTATGA CACATCTCTG
    TTTCAAACTA AAGATGAAAT GATAAAGAGG ATGAATGAGC TTGAATCTAC
    AACAAACGCT GATTTTTGTC ATGGTCCTTC GGTGCCACAT CCCCCTGGAC
    ATGAACTCCA AACAAAGGCT GTTCCTTATC GGATTCCTCT GGATCTTAAA
    CCTATCCAGG GGCTGGGTAC CTACCATCCC TCAGATTCCC GGAACAGTAC
    TGGTAGTTCA CATATGTATG AACCATCTGC ACCTCCCCAG GAGGATCCAC
    TACAACTTAT AAAACAAATG CCTGTTGCAG CAGCTGCTGT TGCAACCGCT
    GCAGTGGTTG CATCCTCAAT GGTTGTCGCT GCAGCTAAAT CTAACAGTGA
    TATCAAACTC GACGTGCCTG TTGCTGCTGC GGCGACTGCT GCTGCAGTTG
    TGGCTACAAC TGCTGCTGTT AACAAGCAGT ACGAATACTT GGAACCTGGT
    TGTCAATTGC TTAGTTTGCC AAGTTCTTCA GGGGCAAATG AATTGATCCC
    GAAGGGTAGA CATGACTTCT GGGATAATCA GCTTGAAATT GATCATGGAC
    AAACTAGTGT TCCCGAGAAA GAAAAAGATT TGGTTGAAGT ACCTCAGGAA
    GCTGAAAGAG TCTCTGACAA GTCGGTTGGG ACTGAAAGCT CAAGATCTGA
    TATTGCCCTA GATGGTGTTG CAGAGTTTGA AATCCAATGG GAAGAGATCA
    CTCTGGGAGA ACGTGTTGGG CTAGGATCCT TTGGAGAGGT GTACAAAGGG
    GAATGGCATG GAACAGAAGT CGCGGTGAAG AAATTCTTGC AGCAAGATAT
    ATCAAGCGAT GCTCTGGATG AATTTAGAAC TGAGGTAACT GTCTGCAATC
    CAAATTTATG ACTGC

    Gene models with high sequence identity

    1. AT1G73660.1 [+] show detail - protein tyrosine kinase family protein
      E-value: 2e-115; Score: 177.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Serine/threonine-protein kinase-like domain 3.4e-05
    HMMPanther ARMC3 3.4e-07
    HMMPanther BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAIN 3.4e-07
    HMMPanther MAP3K DELTA-1 PROTEIN KINASE 5.5e-27
    HMMPanther SERINE-THREONINE PROTEIN KINASE 5.5e-27
    Coil coiled-coil 0
    superfamily Protein kinase-like domain 5.2e-10
    PatternScan Protein kinase, ATP binding site 0
    Gene3D no description 8.1e-12
    ProfileScan Protein kinase, catalytic domain 8.895
    FPrintScan PRICHEXTENSN 3.3e-18
    FPrintScan PRICHEXTENSN 3.3e-18
    FPrintScan PRICHEXTENSN 3.3e-18
    FPrintScan PRICHEXTENSN 3.3e-18

    See the detailed result >

    AT1G73660.1

    Model type
    Protein coding
    Short Description
    protein tyrosine kinase family protein
    Curator Summary
    Encodes a protein with similarity to MAPKKKs. May function as a negative regulator of salt tolerance.
    Computational Description
    protein tyrosine kinase family protein; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Ubiquitin interacting motif (InterPro:IPR003903), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G18160.1); Has 126827 Blast hits to 124278 proteins in 4857 species: Archae - 98; Bacteria - 13376; Metazoa - 48156; Fungi - 11388; Plants - 33654; Viruses - 503; Other Eukaryotes - 19652 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR