K18435

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) abnormal (PATO:0000460) (Rosette leaf::Others)
	sporophyte vegetative stage (PO:0007134)	decreased speed (PATO:0000304) (Adult plant::Growth::slow)
	seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997) (Seed::Number::few)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18435

Determination of introduced cDNA(s)

J033033D05 - Rice Full-length cDNAs - Original: J033033D05

full reading [+] show sequence

AAAAAATCCC AAAACCGAAG GGAAACATAG CAGCCGGCTA AGGTTTCTCC 
CCCCTGCCGC GCCGCGCCGC CTCCCTCCAA CGCCATGGAT GCGCAGCGAG 
CTCTCCTCGA CGAGCTCATG GGCACAGCCC GCGACCTGAC GGAGGAGGAG 
AGGAAGGCGC ACAAGGAGGT GAGGTGGGAC GACCCGGACG TGTGCGCCGC 
CTTCATGGCC CGCTTCTGCC CCCACGACCT CTTCGTCAAC ACCAAGAGCA 
ACCTCGGGTC GTGCATGAAG ATCCATGATC TGAAGCTTAA GGAGAGCTTT 
GAGAGTTCTC CCAGGCGTGA AACTCACATG CGAAGGTTTG AGGCGGAACT 
TGCTCAACAA TGTGAGAAAC TGGTTATAGA TTTGGATAGA AAAATAAGGC 
GTGGTCGAGA AAGGTTGGCT CAAGATGTTG CTGTGCCACC TCCCGTCATA 
GGGAAAACAT CTGAGCAGCT TTCAATTATA GAAGAAAAGG TCAAGAGGCT 
GTTGGAGCAA ATTGAGGAGC TTGGTGAAGC TGGTAAAGTA GATGAAGCTG 
AGGCACTTAT GAGGAAGGTT GAACTTCTAA ATGCTGAGAA GACAGCTTTA 
ACGAATCAAG CAGATAATAA AGTGGCTATG CTTCCACAAG AGAAGAAGAT 
GGAACTTTGT GAAATATGTG GATCATTCTT AGTTGCAGAT GATGTTCTTG 
AGAGGACACA ATCCCATGTG ACTGGGAAAC AACATATTGG CTATGGTTTG 
GTCAGAGATT TTCTAGCTGA ACACAAGGCT GCAAAAGAGA AGGCAAGAGA 
CGAAGAGAGG ATTGCAAGGG AGAAGAAAGC AGAAGAACGT AGGAAACAGA 
GGGAAAAAGA GTATGATGTT GGAGGCAGGG ACGGTGGTTC TAGAAGAGAG 
AAGTCTGGGG ATCGTGACTA TGACCGTGAT CGTTACTATG ACCGCAATCG 
TGGAAGAGAA AGGTCTCATG ATCACAGAGA TAGAGGATCA GAATATAGAA 
GCAGTTCCTA CAGAAATGGT AGGGATTCTG AAAGAGACAG ACACCGATAT 
AGGAGTGATG ACATGAGAAA GGACAGGAGT AGAGTGAGGA GCAGGTCTCG 
TTCTCCAAGC AGGCATGGCC CAGATCAGTG AACATATAGA TAGTTTTATT 
CCGAGTTAAA ACTCATGAGG TAGACCATTA TGTCCCTTTC GCCATTTAAC 
CTGTTGTACA AATGAGTTTT GCGATGTGTT GCGCTTGTTG AATCTCTGTT 
CTGCTGTAAC AGCTCTGTTG GGACCCTACA GTCTTCCTTT TAGAGGGGAA 
AAAATATCAG GTAGGTATTG TTTACCTTTC CTAGTATTTT GAGTTACCTA 
TATTAACATA CAGTGAGGTT TTGTTTCAAC ATTTGAAACT GAAAATTAGT 
CTAATAAAGC TGAAAGCGT

Gene models with high sequence identity

AT5G51410.3 [+] show detail - LUC7 N_terminus domain-containing protein
E-value: 3e-92; Score: 336.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	LUC7 related	6.4e-74
HMMPanther	CISPLATIN RESISTANCE-ASSOCIATED OVEREXPRESSED	9.7e-92
HMMPanther	LUC7 related	9.7e-92
Coil	coiled-coil	0
Coil	coiled-coil	0
Coil	coiled-coil	0
Coil	coiled-coil	0

See the detailed result >

AT5G51410.3

Model type: Protein coding
Short Description: LUC7 N_terminus domain-containing protein
Computational Description: LUC7 N_terminus domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LUC7 related (InterPro:IPR004882); BEST Arabidopsis thaliana protein match is: LUC7 related protein (TAIR:AT3G03340.1).
Link: InterPro Scan - TAIR