K18503

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased length (PATO:0000573) (Seed::Shape::long) decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18503

Determination of introduced cDNA(s)

J013074C21 - Rice Full-length cDNAs - Original: J013074C21

full reading [+] show sequence

GGCGCGCAGC TCAATCATCA GGACGCTAAA CTTGGTTCAA GGTGGTATTC 
TAGTCTCTCT AGACTACATG CATGACGGGA GGACTTCAGG AAGGTAGCAG 
CAGCCGTACT AGAGATGTCC CCCGAGGAAG TGGTGGAATC ACCTACTTCA 
TCGGAAGAAT CGTCGTCCCA CGCCAATATA AACCGCAATG CGTCTCCATC 
GGGCCCTACC ACAGGAATAT GCCTCTCCGG GGGAACGTGG AGAAGAAAGA 
ATGCCTCAAC GACATCCTGC GCAAGGAGGC GCAGAGGCGC AGCGGCGATC 
TATCTTCATC GGAAATTAAG AGCGAATGGA TGAACGAGCT GAGTAGATAC 
GTGGATAATT CACCCGAGTG CTACTACGAC TTCAACTCTT TAAATAAAAA 
CGAAAAGCAT ATGACAACGG AGGATTTCTT GAGCATGCTG CTCGAGGACG 
GCTGCTACAT CCTTCACAAG TTCGTAGTTC GACAGGATAG GACAGCAGCG 
GTAGGAGGAG GAGGAGGTAG CGGACGATAC AGGGAAGACA TCGACGTTAA 
CGTACAACGC GACATCATCT ACCTCGCTGA GAATCAGATA CCGTTCTTCA 
TCCTAGACAA GATCAACGGA ATAATAGGTT GGAGCGTGAC TGGTAAACCT 
CTGGTAGAGG TGTTCTGCTC GTACATCGAA CGAGAGGTGC TCAACTGGTA 
CGGGTACGCC ATCGGACAGC GGTGGAACGT GACACCGGAA CCCATTCATC 
TCCTGCACCT GCTGCACATA CTCCTGATAG GATGCCAGAA GCCGCGGGCG 
CTGACACACA CACACCAGGT GGCTACCGGC GCAGCAGTTC CGACGGAGCC 
GCACGCTGCT CGTTCCCGCA TCGAGGCGTC ATCGGCGAAC ATCACCCGGC 
AGAACGAAAC AGCGATCGAG ATGGTGCCAG TCATCACGGA TGCCTCGACT 
ACCCAGCACG AGCAGACAGC AGCAGGGACG CGCGCCGCCC ATTCCCACGG 
CGAGGCGTCA TCGGGGAACC ACCCCCAGCA GGACGAAACA GCGATCGACG 
TCATCACGGG CGCCTCGGCG ACCGAGCACA GGAATGAGAA GCCACCAGAG 
AAGAAGGGGG TGCGCCGTTT CCTTCGTTGG CGCCGGGCCA AGCAATATGA 
AAAGGCCCGC GTCGATCTCA CAGGCGTCGA CCTGATTTCC ATCGCCGAGG 
GCCCCGGCGG CGAGGCATGC GGTGCTCTCT CAATCCTGGA GTGAAGCTGA 
TCGGGCGGTG TGGCGGAATA CGACTCGAAT TTCCCAGCCT GTACGTCGAT 
GGCGAGACAT GGTGCATGCT AGGCAACCTA ATCGGGCTGG AGCAGAGCAA 
CCCTGACATG ATCCCGCAGC GTGTCACGGC GTACTGCGTG CTCATGTCCC 
AGCTGGCGTG CACCAAGGAA GACGTCGAGC TGCTGGCCCG GAGACGCGTC 
ACCGATCACC TTATGCGCAA CGACGGAGAT TGTGCCACAA AATTCGCCGC 
TCTCTGCGAC GGGGTCAACT TCAACCTGGA CGACCCTAGC CGCAACTACC 
TGCAGAAAGA GTGTGTGGCG CTGGACCAAC GCTACCGGAG TCGGCCATCC 
CAATGGACAG CGTGGATGCT GCGCGAGCAC TGCCGCAACC CCTGCGTCGC 
CGTCGCTTCT GTGCTTGCCA TCATCGCCAT CGCGTTCGGC GTGCTGCAGG 
CTGTCTATAC GGTCCTAAAG CTCGTGCGAA AGGTAAAATA ACAATCTGAT 
TGAGCCTGCA GTTTGTGTGT GGAAAGCGCT CGTATAGGCA TATATGTGTT 
TGTTTCAAGT CTATTTCTTA TCTTTTCCCT ATCTTTTCTT CTTAAATTAC 
TTATTCCACT TTGAGTGGTC TGTTTATAAA CTCATAATAA GAGCTTTGTC 
CATCGCC

Gene models with high sequence identity

AT3G50190.1 [+] show detail - Plant protein of unknown function (DUF247)
E-value: 4e-09; Score: 60.50

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Protein of unknown function DUF247, plant	8.9e-37
HMMPfam	Protein of unknown function DUF247, plant	6.4e-33

See the detailed result >

AT3G50190.1

Model type: Protein coding
Short Description: Plant protein of unknown function (DUF247)
Computational Description: Plant protein of unknown function (DUF247); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT3G50140.1); Has 1131 Blast hits to 1013 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1129; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link: InterPro Scan - TAIR