K18526

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18526

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Original: K18526

Determination of introduced cDNA(s)

  • J033113N10 - Rice Full-length cDNAs - Original: J033113N10

    full reading [+] show sequence

    Nucleotide sequence: J033113N10 - full reading
    GACCGCCCTC ACTTCCACCG CCGCCGCCGC CGCCGCCGTG TACCCCCTCC 
    CCCGCCGCTT GACGCGCCTC CTCTTCGTCG ACCCAATCCC TCCGTCGGCT
    AGGGCTCTGA CACTGACCGT GGTCCGTGAG CACTTGGCCA CTAGTCCCTG
    CTCTGCCACT GGGTTCAGCA TATGGATTTG CCAGGTCCAA GATGGAAGAA
    GGGCAAAGAT GGCAAGGACT TTGCGTCCCT AGCAGCAGCT AACCCCATGT
    CAGCCATTGT TTCTGAGCTC AAGGCCTCAT TCATAAGCTC AAAGCCCGTG
    GCAATTTTGT CTGGTCCGGG TGGTAGCGCC GTTCTTGGAG TTGGGCCAGA
    GCAAGCCGTG ATCCTAAACC GTGCTGCCTT TGGCCATGCC ATCGAAAATG
    CAACAGCACA GAAGCATTGG TTCCAACTCA GCCCCGAGGA GGTCTTTTAC
    CTATGCCATG CTCTGAATTG CATCAGGGTT GACTCACTGG ACAATAAGCA
    AATGAGTGAA ATTGAACTGT GGGATTACTT TAGGTCTGGA TCGGAGTCAT
    TTCCGGAGAT GTACAAGGCT TACGCACATC TGAGATTGAA GAACTGGGTG
    GTGAGATCAG GGCTGCAGTA TGGTGCGGAT TTTGTAGCTT ACCGTCACCA
    TCCAGCGCTC GTCCACTCGG AATTTGCAGT GGTTGTAGTT CCAGAAGGTG
    CAGAGTTTGG CAATAGGTGT GGCCGTCTGG AGGTGTGGTC TGATCTACTA
    TGTGCACTCC GGGCTTCTGG CAGTGTAGCA AAGACATTAC TGGTTCTGAC
    AATTAGCAGC AGCAGTAAAT GTGAACTGAG CTCCCCAGAT TGTTTGGAAC
    AGCTTGTTGT TCACGAGAGA ACGATCACAA GATGGATACT GCAGCAATGC
    CGTGAACAAC GATGTGAACC AAGCAGAGAT GAAGTGAATA GGGAAGAACT
    GATTATTGAA AAGGAAAGTG TAGTATTTAA TCACTGGGGT GTGATACTAG
    GCTTCACTGT TCTATCTGGC TTGCTTGTGT ACAGGTTGAA ATTCAGACAA
    TAGAGTTAAC ATTTCTGTGC ACCTGTGTTG TTGAGGTGTT AGCTTGGAAT
    TTGAAATCCT GAGTTGTACT CTTTTGTGAG CCTTGCTTCT GGTTTCTAGT
    CTAGATATGA CAAATAATTA TAGCCACGCA TCTGACTTGG ACAGCAGAGA
    AACGTTTGAA TTTTGATCTG TCTTAGATCT TGAAT

    Gene models with high sequence identity

    1. AT5G60230.2 [+] show detail - splicing endonuclease 2
      E-value: 2e-51; Score: 200.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam tRNA intron endonuclease, catalytic domain-like 7.7e-24
    HMMPfam tRNA intron endonuclease, N-terminal 0.000000047
    superfamily tRNA intron endonuclease, catalytic domain-like 1.5e-23
    Gene3D Endonuclease TnsA, N-terminal/resolvase Hjc/tRNA endonuclease, C-terminal 7e-19
    HMMPanther TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN2 2.8e-43

    See the detailed result >

    AT5G60230.2

    Model type
    Protein coding
    Short Description
    splicing endonuclease 2
    Curator Summary
    putative subunit of tRNA splicing endonuclease
    Computational Description
    splicing endonuclease 2 (SEN2); CONTAINS InterPro DOMAIN/s: tRNA intron endonuclease, catalytic domain-like (InterPro:IPR006677), tRNA-intron endonuclease (InterPro:IPR006676), Endonuclease TnsA, N-terminal/resolvase Hjc/tRNA endonuclease, C-terminal (InterPro:IPR011856), tRNA intron endonuclease, N-terminal (InterPro:IPR006678); BEST Arabidopsis thaliana protein match is: splicing endonuclease 1 (TAIR:AT3G45590.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR