K18540

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18540

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18540

Determination of introduced cDNA(s)

  • J013129I21 - Rice Full-length cDNAs - Original: J013129I21

    full reading [+] show sequence

    Nucleotide sequence: J013129I21 - full reading 
    TCAGCTCTTC TTCCAGCCCT AGCCCCCCTC CCCCCCGCGC CGCCACCACC 
    TCGCTCTCCG CCGCCGCCGC CGCCGTCTCC AACTTCAAGA TGGTGCTCTC 
    GAACGACATC GACCTGCTTA ACCCGCCGGC GGAGCTGGAG AAGCTCAAGC 
    ACAAGAAGAA GCGCCTCGTC CAGTCCCCCA ACTCCTTCTT CATGGATGTC 
    AAGTGCCAGG GCTGCTTCAA CATAACGACT GTATTCAGCC ACTCCCAGAC 
    CGTGGTTGTG TGCCCGGGCT GCCAGACCGT GCTCTGCCAG CCTACTGGTG 
    GGAAGGCCAG GCTCACGGAG GGCTGCTCCT TCCGCCGGAA GAGCGACTAG 
    GTTAGGCTGT GTGGCTTGTT GTTACTGGGA CAGAAATGCC CTGCTGAACA 
    ATACTATCCC GTTACCCTTC CTGATGTGTA CTCCATAAAT TTTGTTAATT 
    ATGCCTACCT GTTTACTGCC CTGCATGATG TAGCAATGCG TTATGTATCT 
    TGCATTTTGT GCTGGAGAAA GCTACTTCGT ATAATGCGTG CCCCTCCACC 
    TTGTTCAATT CTCTCTGTAT CAAAGATTTT GGTTTTTGGT TTTAGCCTTG 
    CGTTGCTCAT GAGACTAATT TGCTTAGCTG CAAAATATTT TGTTACAGTG 
    CCAAGTACCT GGATATATTG TCATGCATTT CCTTCTTAGA ATGACATCAA 
    GGGCACAAAG TTTCATGTTA CACTTGTATG ATATACAGGT GACATGTTGT 
    ACAGATAGGT TTGTTTATCT TATACCATGT AGTTAGTGAT TGGGTTCTGT 
    GTACAGGTAA CAGTCTGTAA CTTATCACCT TTAATTTCGT CAATACAAAT 
    GCTACGTGGT GGGGCTGATT GGTGTTGC

    Gene models with high sequence identity

    1. AT3G61110.1 [+] show detail - ribosomal protein S27
      E-value: 5e-36; Score: 148.00

     

    InterPro Scan Digest

    Program Description E-value
    BlastProDom Ribosomal protein S27e 4e-16
    superfamily Ribosomal protein, zinc-binding domain 6.8e-22
    HMMPanther Ribosomal protein S27e 4.9e-55
    PatternScan Ribosomal protein S27e 0
    HMMPfam Ribosomal protein S27e 3.3e-27

    See the detailed result >

    AT3G61110.1

    Model type
    Protein coding
    Short Description
    ribosomal protein S27
    Curator Summary
    Arabidopsis ribosomal protein
    Computational Description
    ribosomal protein S27 (RS27A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein, zinc-binding domain (InterPro:IPR011332), Ribosomal protein S27e (InterPro:IPR000592); BEST Arabidopsis thaliana protein match is: Zinc-binding ribosomal protein family protein (TAIR:AT2G45710.1); Has 1035 Blast hits to 1035 proteins in 379 species: Archae - 136; Bacteria - 0; Metazoa - 447; Fungi - 151; Plants - 149; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR