K18544

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18544

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18544

Determination of introduced cDNA(s)

  • J013063J15 - Rice Full-length cDNAs - Original: J013063J15

    full reading [+] show sequence

    Nucleotide sequence: J013063J15 - full reading 
    GGCCCTAAAA GAAGAGAGAA CGCGCCGCGC CGCGCCGAGC CGCGTGGGTA 
    TAATTGAAGG GAAGCGGTGC GCTCGCTCGC TGCATCCAGC TCAACGCGCG 
    GGGGAGGCGG AGCGAATCGG CGGATCGGTG GGTTGCGGGC TTGCACGTAG 
    TCGAGGCTCG AGAGGAGGGG GGGATGGCGG CGGCGGCGGC GGCGGCGGGG 
    TACAGGGCGG AGGAGGAGTA CGACTACCTG TTCAAGGTGG TGCTGATCGG 
    GGACAGCGGC GTGGGGAAGT CGAACCTGCT GTCGCGGTTC GCGCGGGACG 
    AGTTCAGCCT GGAGACCAGG TCCACCATCG GCGTCGAGTT CGCCACCAAG 
    ACCGTCCGCG TCGACGACAG GCTCGTCAAG GCCCAGATCT GGGACACCGC 
    CGGCCAAGAG AGGTACCGCG CCATCACGAG CGCCTACTAC CGCGGCGCGG 
    TGGGCGCGCT GGTGGTGTAC GACGTGACGC GCCGCATCAC GTTCGAGAAC 
    GCGGAGCGGT GGCTCAAGGA GCTCCGCGAC CACACGGACG CCAACATCGT 
    CGTCATGCTC GTGGGCAACA AGGCCGACCT GCGCCACCTC CGCGCCGTCC 
    CCGCGGAGGA CGCCAGGGCG TTCGCCGAGG CGCACGGGAC CTTCTCCATG 
    GAGACGTCGG CGCTGGAGGC CACCAACGTG GAGGGCGCCT TCACCGAGGT 
    GCTCGCGCAG ATCTACCGCG TCGTCAGCCG GAACGCGCTC GACATCGGCG 
    ACGACCCCGC CGCGCCGCCC CGGGGGCGGA CCATCGACGT CAGCGCCAAG 
    GATGACGCCG TCACCCCCGT GAACAGCTCA GGGTGCTGCT CGTCTTGACT 
    TTGACTCGCT CAAACTCATC GTCGTCGAGC TATGCAAATT GCCACCGTTC 
    ACAGCTTTGT TTATACCGTG TGTTTTCGTC ACTGCTGATT GATACTACAA 
    ACTTGAGAAT TGGGATCAAA AGGTTGCATT TTG

    Gene models with high sequence identity

    1. AT5G60860.1 [+] show detail - RAB GTPase homolog A1F
      E-value: 2e-89; Score: 326.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily P-loop containing nucleoside triphosphate hyd 9e-64
    FPrintScan Ras GTPase 5.2e-39
    FPrintScan Ras GTPase 5.2e-39
    FPrintScan Ras GTPase 5.2e-39
    FPrintScan Ras GTPase 5.2e-39
    FPrintScan Ras GTPase 5.2e-39
    HMMPanther Rab11-related 3.8e-90
    HMMPanther RAS-RELATED GTPASE 3.8e-90
    HMMPfam Ras 2.8e-58
    HMMSmart Ras small GTPase, Ras type 3.7e-24
    HMMSmart Ras small GTPase, Rab type 5.1e-106
    HMMSmart Small GTPase, Rho type 2e-11
    HMMSmart Ran GTPase 7.5e-06
    Gene3D no description 1.5e-63
    ProfileScan Small GTPase 34.622
    HMMTigr Small GTP-binding protein 6.3e-36

    See the detailed result >

    AT5G60860.1

    Model type
    Protein coding
    Short Description
    RAB GTPase homolog A1F
    Computational Description
    RAB GTPase homolog A1F (RABA1f); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1G (TAIR:AT3G15060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR