K18638

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18638

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18638

Determination of introduced cDNA(s)

  • J033149O18 - Rice Full-length cDNAs - Original: J033149O18

    full reading [+] show sequence

    Nucleotide sequence: J033149O18 - full reading
    GAGCCGGTGT CCTCGCTTCT CTCCTCGCCA CTTCCCCTAT TCGGTCAGGC 
    ACATCTCCCC ACCCCCCAAC AATCATCGAG GAAGAAGAGG GAGGGACGAC
    GATGTCGATG CCGGAGGCGG GGCGCTCGGA GAGGGACGGG CGGGAGCAGG
    ACGACGACTA CGAGCAGCAG CAGGCCAGGG TGCTCATGGC ACTGATGCAG
    GGCTTCTGCG CCGCACGCTA CCGGAAGGCC GACAACATCC CGTGCCCCAT
    CGTCCAGGGG CTATACTTGG GATCTGTTGG GGCAGCAATG AACAAGGATG
    CTTTAAAGAG CTTGAACATA ACCCATATCT TGATTGTTGC CAGATCATTA
    AATCCAGCCT TTGCAGCTGA ATTTAACTAC AAGAAGATTG AAGTACTTGA
    CAGCCCAGAC ATTGATTTGG CAAAGCATTT TGATGAATGC TTTAGTTTCA
    TTGATGAATC TATCAGCTCT GGTGGCAATG TTCTGGTTCA TTGCTTTGCT
    GGACGGTCAA GAAGTGTCAC GATTATTGTT GCATATCTGA TGAAGAAGCA
    TCAAATGAGC CTTGAGAACG CGTTGTCGCT AGTTAGAAGC AAACGACCTC
    AAGTGGCTCC TAATGAGGGA TTCATGTCTC AGCTGGAGAA CTTTGAGAAA
    TCCATGCAAG TGGAGCAGGA GAGGAAACTT ATGCAACCTG TGCAGAACTA
    ACTATAGGCG TAAATGCATG TGTTGAGAAT ACACTGCTAA TAGCTTGCGG
    AGCAGTCTAG AGATCAAGGC CGTAGTGCAA AATGTTATGA ATTCTAGCTG
    CGGTATTATT AGCAGTCGTC TAATTGATGC TGTAAGCTTC AAGTGAAATT
    GGTGGTCAAT GCAATGAAAT ACTCTGGGAT CCAGTTCTGT GAGGGTAACC

    Gene models with high sequence identity

    1. AT3G23610.3 [+] show detail - dual specificity protein phosphatase 1
      E-value: 8e-48; Score: 187.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 2e-48
    HMMPanther SKRP-RELATED DUAL SPECIFICITY PHOSPHATASE 4.8e-78
    HMMPanther DUAL SPECIFICITY PROTEIN PHOSPHATASE 4.8e-78
    superfamily (Phosphotyrosine protein) phosphatases II 3.3e-48
    HMMPfam Dual specificity phosphatase, catalytic domain 3.4e-36
    HMMSmart Dual specificity phosphatase, subgroup, catalytic domain 1e-45
    HMMSmart Protein-tyrosine phosphatase, catalytic 0.006
    ProfileScan Dual specificity phosphatase, subgroup, catalytic domain 40.54
    ProfileScan Dual-specific/protein-tyrosine phosphatase, conserved region 14.633

    See the detailed result >

    AT3G23610.3

    Model type
    Protein coding
    Short Description
    dual specificity protein phosphatase 1
    Curator Summary
    Encodes a dual specificity protein phosphatase whose activity is modulated by CaM binding.
    Computational Description
    dual specificity protein phosphatase 1 (DSPTP1); CONTAINS InterPro DOMAIN/s: Dual specificity phosphatase (InterPro:IPR020417), Dual-specific/protein-tyrosine phosphatase, conserved region (InterPro:IPR000387), Dual specificity phosphatase, catalytic domain (InterPro:IPR000340), Dual specificity phosphatase, subgroup, catalytic domain (InterPro:IPR020422); BEST Arabidopsis thaliana protein match is: MAPK phosphatase 2 (TAIR:AT3G06110.3).
    Link
    InterPro Scan - TAIR