K18650

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18650

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Original: K18650

Determination of introduced cDNA(s)

  • J023003I12 - Rice Full-length cDNAs - Original: J023003I12

    full reading [+] show sequence

    Nucleotide sequence: J023003I12 - full reading 
    GCCCATGGCA GCCGCGAAGC CGGTGGAGCC GCTGCCGCTG CTACGAGCCG 
    GCGCGGATAC CGCCGCCGCC GCCGCTCTCC GGAGATTCCA GCTTCCGCCG 
    CAGCCACCAC GCAGTGTCAG AGCCAACGCT ATCAGGGCCT CTCCTCCTTC 
    GAACGGCGCC GGGAGCCCCG ACGAGCTACC CGCCGCGCTC CTGCCCAACG 
    CGGCGCGGCG GCGGGACGGC TGCGGGTTCA GCCTCGGCGT GGACCTGGGA 
    GAAGCACGCA CCGGAGTCGC CGTCGGCAGG GGCATCACCC TCCCCCGTCC 
    CCTCACCGTT CTGAAGCTGC GTGGGCAGAA GCTGGAGCTG ATGCTGCTTG 
    ACATAGCTCA GCAGCAGGAG GCGGACGAGC TGATCGTGGG GCTCCCCGTC 
    TCCGCCGACG GGAGCGAGAC GCCGCAGTCC AACAAGGTTC GGAGCGTCGT 
    CGGGAGGCTC GCCGTCCAAG CGGCCGACAG GGGATTGCGG GTGTATCTGC 
    AGGATGAGTA CGGGACAACG ATCGACGCCC TCGAGTTCAT GATCTCCAGG 
    GGAGTCAAGA GGTCTGCACG TGATGTCAAA TCTGATGCGT ATTCTGCCAT 
    GATGATTTTG GAGAGATATT TCTCGTCATC AGGTCAAGGG GCTAAGATTG 
    TTCTTCCTAA ACAACCACAA CTACAGAGCA AATTGTTAGA GAAGTCAAGG 
    CAAGATGCTC AAGTTTAGGA AGCCGTGTAC GTTCTAATCT CTCCAACCAT 
    AGATAGCAGA CTTATCACAA CAGCGTTCTT GTTGTTCTAC CAGCTAACTT 
    CAATTGCGTA GTACAGTATT TTATATAGTC TTGTTCGCCG TACTCATATG 
    ATTAAACGAA GGGAGGATGA CTTGTTGACA TTCTGCCAAT TTATCAAAAT 
    TACAAGTTTC GATC

    Gene models with high sequence identity

    1. AT1G12244.1 [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
      E-value: 3e-44; Score: 175.00

     

    InterPro Scan Digest

    Program Description E-value
    HAMAP Resolvase, holliday junction-type, YqgF-like 16.555
    superfamily Polynucleotidyl transferase, ribonuclease H fold 1.5e-24
    HMMSmart Resolvase, RNase H-like fold 1.1e-22
    HMMTigr Resolvase, holliday junction-type, YqgF-like 0.00000000000096
    Gene3D Resolvase, holliday junction-type, YqgF-like 6.4e-22
    HMMPfam Resolvase, holliday junction-type, YqgF-like 4.6e-28

    See the detailed result >

    AT1G12244.1

    Model type
    Protein coding
    Short Description
    Polynucleotidyl transferase, ribonuclease H-like superfamily protein
    Computational Description
    Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, nucleic acid binding; INVOLVED IN: DNA repair, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, DNA recombination, response to DNA damage stimulus; LOCATED IN: endomembrane system, cytoplasm; CONTAINS InterPro DOMAIN/s: Resolvase, RNase H-like fold (InterPro:IPR006641), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Resolvase, holliday junction-type, YqgF-like (InterPro:IPR005227); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR