K18718

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18718

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18718

Determination of introduced cDNA(s)

  • J033084O03 - Rice Full-length cDNAs - Original: J033084O03

    full reading [+] show sequence

    Nucleotide sequence: J033084O03 - full reading 
    GATTCAGACA ACGGTAGTGG AGTGTGTGAG TAGCTGAGGA GGTCGACCAT 
    GGCGGCGGCT AGGGTTGCGA TGTGGGTGGC GTGCGTGTTG GCAATGGCGG 
    CGGCGTGCCA GGGGCGGCTT AGGGTTGGGT ACTACAAGCG GAAGTGCGCG 
    CCGGCGGAGT ACGTCGTCAG GGCCGTCGTC GGCAACGCCG TCCGCCAGAA 
    CCCCGGCGTC GGCGCCGGCA TCGTCCGCAT GTTCTTCCAC GACTGCTTCG 
    TCCAGGGGTG TGACGCGTCG GTGCTGCTCG ACCCGACGGC GGCGAACCCG 
    CAGCCGGAGA AGCTCGGCCC ACCGAACTTC CCCAGCCTGC GGGGGTTCGA 
    GGTGATCGAC GCGGCGAAGG CGGCGGTGGA GAAGGCCTGC CCGGGCGTCG 
    TCTCCTGCGC CGACATCATC GCGTTCGCGG CGCGCGACGC CTCCTTCTTC 
    CTTAGCGGCG GCGGCATCAG CTACCGCATC CCCGCGGGGA GGCTCGACGG 
    ACGCGTCTCC CTCGCCAACG AGACGCTCGC GTTCCTCCCG CCGCCGGTGT 
    TCAACCTCAC CCAGCTCGTC GCCAGCTTCC AGGCGAAGGG CCTCGACGCC 
    GACGACATGG TCACCCTCTC CGGCGCGCAC ACCATCGGCC GCTCCCACTG 
    CTCCTCCTTC GCCGACCGCC TCTCGCCGCC GTCGGACATG GACCCCGGCC 
    TCGCCGCCGC GCTCCGGAGC AAGTGCCCGG CGAGCCCCAA CTTCACCGAC 
    GACCCGACGG TGGCGCAGGA CGCGGTGACG CCGGACAGGA TGGACAGGCA 
    GTACTACCGG AACGTGCTCG ACAGGAAGGT GCTGTTCGAC TCCGACGCCG 
    CGCTGCTGGC GTCGCGGCCG ACGGCGGCGA TGGTGGCGCG GAACGCGGCG 
    GCGCGCGGGA GGTGGGAGAG GAGGTTCGCG AGGGCGATGG TGAAGATGGG 
    CGGGATCGAG GTCAAGACCG CCGCCAATGG CGAGATCAGG AGGATGTGCA 
    GGGTTGTCAA CGAGTAACTG TTAATTTCAG AGGAGGATGC ATCTAGCTAC 
    GTACGTGCCA TTTTGATTTG TTTTCTTCAG AATTCAGAAG CATGAATTGT 
    CACATTTCAA TATTATTTCG TTGCTTGATT CGAGATGATC TGGGGCAAAT 
    GTTGTATTTG CACCTGACGG AATTAATTGT ACGCTCCATT AGAGATATGA 
    TCGAATAAAG TTTTTCAGTT TTTAGCCAGC C

    Gene models with high sequence identity

    1. AT4G11290.1 [+] show detail - Peroxidase superfamily protein
      E-value: 1e-62; Score: 237.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Haem peroxidase, plant/fungal/bacterial 2.6e-70
    PatternScan Peroxidases heam-ligand binding site 0
    PatternScan Peroxidase, active site 0
    superfamily Haem peroxidase 7.6e-100
    ProfileScan Haem peroxidase, plant/fungal/bacterial 69.333
    Gene3D no description 2.3e-53
    FPrintScan Plant peroxidase 8.8e-44
    FPrintScan Plant peroxidase 8.8e-44
    FPrintScan Plant peroxidase 8.8e-44
    FPrintScan Plant peroxidase 8.8e-44
    FPrintScan Plant peroxidase 8.8e-44
    FPrintScan Plant peroxidase 8.8e-44
    FPrintScan Plant peroxidase 8.8e-44
    FPrintScan Plant peroxidase 8.8e-44
    FPrintScan Haem peroxidase, plant/fungal/bacterial 2.2e-26
    FPrintScan Haem peroxidase, plant/fungal/bacterial 2.2e-26
    FPrintScan Haem peroxidase, plant/fungal/bacterial 2.2e-26
    FPrintScan Haem peroxidase, plant/fungal/bacterial 2.2e-26
    FPrintScan Haem peroxidase, plant/fungal/bacterial 2.2e-26

    See the detailed result >

    AT4G11290.1

    Model type
    Protein coding
    Short Description
    Peroxidase superfamily protein
    Computational Description
    Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT1G05260.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR