K18727

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18727

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18727

Determination of introduced cDNA(s)

J033050K07 - Rice Full-length cDNAs - Original: J033050K07

full reading [+] show sequence

GACGTACCAC ACAACGTACA CACGACGAAC CCCCACGACG CACTTAGCTA 
AGCTAGCGTA TAGTCTCTGA TCGATCCGAT CTCCGACGAC GACGACGACG 
ATGGCCGGTA AAGTAAGCGC GGTGGTGCTG GTGGCGTTGG TGGTGGTGGC 
GGCGGCGGCG GGCGGCGCGG CCGGGCTGTC GATGTGCGGC GTCGACCGGT 
CGGCCGTGGC GCTGTGCCGG TCGTACTGCA CGGTGGGGAG CGCGGAGAAG 
GCGCCGACGA AGGAGTGCTG CAAGGCGGTG GCGAACGCCG ACTTCCAGTG 
CCTCTGCGAC CGCAGGGACA TGCTCCGCAA CCTGGAGAAC ATCGACGCCG 
ACCGCGCCAC GCAGATCCCG TCCGAGTGCG GCTAAAGAGT CTGCTTCTCC 
AGAAGCCAAT GACCTGGCTC ACTGGGACCT AAGCTTCTGG AGTGAACGAC 
TCCGGGAATC TAAATATGAT ATCAACGAGG AAGATTTGCG TCCTTACTTT 
GCACTACCCA AGGTTATGGA TGGCCTCTTC AGTCTCGCAA ATAGGCTCTT 
TGGTGTTAGC GTAGAGCCTG CAGATGGACT GGCTCCTGTT TGGAATAGTG 
ATGTCAAATT TTACTGTGTC AAAGATTCTT CGAATAGCCC TGTTGCTTAT 
TTCTACTTCG ATCCATATTC AAGACCATCT GAGAAGCGTG GAGGGGCTTG 
GATGAATGTG GTTTTTTCTC GCAGTCGTGT GCTTGCTCGC AATGGTTCAC 
CTGTCAGGCT TCCTGTTGCC CATATGGTGT GTAATCAGAC CCCACCAGTT 
GGTGATAAAC CCAGTCTTAT GACCTTCCGT GAGGTTGAAA CTGTGTTCCA 
TGAATTTGGT CATGCGCTGC AGCACATGCT TACCAAACAA GATGAAGGAT 
TTGTTTCTGG TATTCGTGGA GTAGAATGGG ATGCTGTAGA GCTGCCCTCT 
CAGTTCATGG AGAACTGGTG CTACCACAAG AATACTCTTT TGAGCATTGC 
AAAGCATTAT GAAACAGGCG AACTTCTTCC AGAGGAAATT TATGCAAAGC 
TTGTCGCTGC AAAGAATTTC CGTGCTGGCA CCTTCAGTTT ACGTCAGATA 
CGTTTTGCTA GTGTGGACAT GGAGCTGCAT ACGACTTACG ATCCAAATGG 
TTCATTGTCC ATATATGATG TCGACCGAAG AGTTGCTGAG CGAACACAGG 
TTCTTGCTCC TCTTCCGGAG GATAAATTCC TGTGCAGCTT TAGCCATATA 
TTTGCAGGAG GCTATGCAGC TGGATACTAC AGTTACAAGT GGGCTGAAGT 
ATTGTCAGCT GATGCATTCT CAGCATTTGA AGACGTTGGT TTGGACAATG 
AGAAGGCAAT TGAGGAAACT GGCAGACGAT TCAGAGAAAC AGTCCTTGCG 
CTTGGAGGTG GAAAATCTCC ACTCGAGGTG TTTGTGTCTT TCCGCGGACG 
GGAGCCATCA CCGGAAGCTC TGCTCAGGCA CAACGGCTTG CTACCTGTTG 
CTGCATTGTG ATAACTCATG CTCGATTGTC CCCTTCTTTT TTCTTTTAAC 
TTGCGAAAAC GGCTTGTAAG ATGTTATTGA TTGATGGCAT ATCAGCAACA 
CGCTAAAAGT GCCGTGTCCT GCTTACAACA TGAAAAACAA GTTGCTGTGC 
ACAACCATTA TATAATGATC ATCGCTGCTT CTTGCCGTTC

Gene models with high sequence identity

AT5G65620.1 [+] show detail - Zincin-like metalloproteases family protein
E-value: 6e-174; Score: 607.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	OLIGOPEPTIDASE A	1.2e-195
HMMPanther	PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED	1.2e-195
superfamily	Bifunctional inhibitor/plant lipid transfer protein/seed storage	3.4e-10
superfamily	Metalloproteases ("zincins"), catalytic domai	6.7e-130
Gene3D	no description	2.7e-65
HMMPfam	Peptidase M3A/M3B, thimet/oligopeptidase F	4.7e-115
Coil	coiled-coil	0

See the detailed result >

AT5G65620.1

Model type: Protein coding
Short Description: Zincin-like metalloproteases family protein
Computational Description: Zincin-like metalloproteases family protein; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cytosol, chloroplast, chloroplast stroma; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M3A/M3B, thimet/oligopeptidase F (InterPro:IPR001567); BEST Arabidopsis thaliana protein match is: Zincin-like metalloproteases family protein (TAIR:AT5G10540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR