K18732

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18732

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
T2  
cauline leaf (PO:0000013)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Original: K18732

Determination of introduced cDNA(s)

  • J023108J12 - Rice Full-length cDNAs - Original: J023108J12

    full reading [+] show sequence

    Nucleotide sequence: J023108J12 - full reading 
    GAGTCCCCCA TTGATGACCT CCGCCGCCAC CGCCGTAGAT GCACAGGCTC 
    TCCTTCCTCC AGGCCACCAT CATTGACGCG CCGCGGTGGG GGCGGCGAGT 
    CGGAGTCGGA GAATGAGGAG GAGGAGGAGA AGCGGGGGGG CAGGGCGGGG 
    GAGAGGAGGC TCAGAGGCGG CGGGAGCGCC GCGGCGGCGG CGGCGGCGGC 
    GGGGAGCGGG GAGCTCCTCT CCATCCCCGG CGTGGGGCCT CGCAACCAGA 
    GGAAGCTCGT GGACAACGGA TTCGAGGGCG TCGCGCAGCT TAAGCAGCTC 
    TATCGGGATA AGTTCTTTGG AAAATATAGC GAGAAGATGG TTGAGTTTTT 
    ACAGAGCTCG GTTGGCATCA TTCATAAGAA CCATGCTGAG AGTATAACTT 
    CTTTCATTAA GGAGAGTGTT GATGAGGAGC TGAAGGATGC AGACTCATCT 
    AAGGCTTCTC AGAAGAAGAG GCTCACCTTT TGCGTGGAAG GGAATATTAG 
    TGTTGGGAAG TCTACCTTTC TCCAAAGAAT AGCTAATGAG ACCATCGAAC 
    TGCGTGATCT TGTAGAAATA GTGCCTGAAC CTGTTGCTAA GTGGCAGGAT 
    ATTGGCCCTG ACCACTTCAA TATATTGGAT GCTTTCTATG CTGAGCCACA 
    TAGGTATGCC TATACCTTTC AAAATTATGT GTTTGTGACA AGGGTCATGC 
    AAGAAAGGGA ATCTTCAGGT GGAATAAAAC CTCTCAGACT GATGGAAAGA 
    AGTGTTTTCA GTGATAGGAT GGTATTTGTT CGTGCTGTTC ATGAAGCTAA 
    CTGGATGAAT GAGATGGAGA TCAGCATTTA CGACTCATGG TTTGATCCTG 
    TTGTGTCATC GCTTCCAGGT CTTATCCCTG ATGGATTTAT CTATCTAAGA 
    GCTAGCCCAG ATACTTGCCA CAAAAGAATG ATGCTCCGGA AAAGAGCAGA 
    GGAAGGTGGT GTTACTCTTG ACTACTTGCA AGGTTTGCAT GAGAAACACG 
    AGAGCTGGTT GCTTCCTTCA AAAGGAGGAG GTACTGGTGT GTTATCTGTC 
    AGTCAGCTGC CCACACATTT GGAAGGTTCC TTGCCTCCAG CAATTCGAGA 
    TCGTGTCTTT TACTTGGAAG GAGATCACAT GCACTCAAGC ATCCAGAAGG 
    TCCCTGCTCT GGTCTTGGAT TGTGAACCTG ACATTGATTT CAACAAAGAT 
    ATAGAAGCTA AACGGCAATA TGCTCAGCAA GTTGCAGAAT TCTTTCAATT 
    TGTGAAGAAA AAGAAGGAAG CTCCATCTGA ACAAACAAGC ACTGACAAGA 
    ACCGTATCAA TCCACAGATC ATGCTTCCTC ACAAAGGCGG ATTGTGGGTT 
    CCTGATGGAA GAAACCCTTT CTCAGGATCT GCTATGAATC TGAACTTCAG 
    AAGAGCCATG TCTTCCTATC TCTCGACATA GGATTTCAGC TCCAGAATGA 
    ACGTAGGATC TTACAAATCC CACTCTCACT GACCTTGTAA ATGGGCCTAT 
    GCGTTAAGTT AAACCTAGGT TAGCCACTGA TGTAAGATAG TCTGCCACCG 
    CATCTCCATC TTTTGTAAAT GATCATCTTC CACCCTTTCC GAGTTCCATG 
    TTTTGTAGTA GCGTCAGCTT CCGTTTGTCT GAGTTCTGGT ATCTGTATCG 
    TTATGTTGGT TGCTGACTAC ATTCTGTTAG ATGATCCGGA ACTCTTTGAC 
    ATTTCTGGGA AAGATGCTTC AGTACTTGCC GTTTGTTTGT C

    Gene models with high sequence identity

    1. AT1G72040.1 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
      E-value: 2e-168; Score: 589.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther DEOXYGUANOSINE KINASE-RELATED 8.9e-224
    HMMPanther Deoxynucleoside kinase 8.9e-224
    HMMPfam Deoxynucleoside kinase 6.9e-27
    superfamily P-loop containing nucleoside triphosphate hyd 6.1e-47
    Gene3D no description 1.8e-50

    See the detailed result >

    AT1G72040.1

    Model type
    Protein coding
    Short Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Computational Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: phosphotransferase activity, alcohol group as acceptor, ATP binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Deoxynucleoside kinase (InterPro:IPR002624); Has 2859 Blast hits to 2855 proteins in 704 species: Archae - 0; Bacteria - 1629; Metazoa - 493; Fungi - 0; Plants - 69; Viruses - 71; Other Eukaryotes - 597 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR