K18742

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) increased width (PATO:0000600) (Rosette leaf::Shape::wide)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Shape::zigzag)
T2
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) increased width (PATO:0000600) (Rosette leaf::Shape::wide)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18742

Determination of introduced cDNA(s)

J023101D03 - Rice Full-length cDNAs - Original: J023101D03

full reading [+] show sequence

GCCACTCGAA GAGCTCGGCG GTGGAACAGC TCGCTCGATC ATGGCCGCCG 
CCGCCGCCGC CTCAAGGGCG CTCTGGGCTT GCCGCACCGC CTCCTACCTT 
CGGATCTCCT CCTTCCCCAG GGCTTTCTCC ACCGTCCTTA AAGATCTAAA 
ATATGCTGAT ACTCATGAGT GGGTGAAGGT TGAGGGTGAT TCAGCAACCA 
TAGGGGTCAC AGACCATGCT CAGGACCATT TGGGTGATGT TGTGTATGTT 
GAGCTTCCAG AAGTTGGTTC CACAGTATCA CAAGGAACGA ACTTTGGTGC 
GGTTGAAAGT GTGAAAGCAA CCAGTGATAT CAATGCACCA GTATCTGGAG 
AGATTATTCA AGTAAATGAT GAACTAAGTG AAAAACCAGG ATTTATAAAT 
GGAAGTCCAT ATGAGAAGGG ATGGATCATC AAGGTTAAGA TAAGTGATCC 
AAGTGAGTTA AACTCGCTGA TGGATGATGA GAAGTACAAG AAGTTTTGTG 
AGGAAGAAGA TGGCAAACAC TGATCAATCC CCTAACTGCT GGATTTCAAG 
AAACTATGCA GCAACTCACC ATCATGACAA TGAGCCATCT CGCCTCTCCT 
ACCACATTAT ATTATTCTGG ATAGAGGAGT CCCAAGGAAT GTAATAAGCT 
GAAACATTTT TCTTGCAAAT CAGACATGAA AATTTTGTAG TGTCCTGATC 
ATTCCGTTTG TGCTCCATTT GAAATTCAGC TCTTGATTTG CTTATCATCT 
GAATACAGGT GGAGGATTGG GTTTGTTTAA ACTTTGATTA AGTGACAGTG 
ACTTGATTGT ATTGAGATTG C

Gene models with high sequence identity

AT2G35120.1 [+] show detail - Single hybrid motif superfamily protein
E-value: 1e-57; Score: 219.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Glycine cleavage H-protein	1.1e-49
HMMPanther	Glycine cleavage H-protein	2.4e-66
superfamily	Single hybrid motif	3.2e-48
HAMAP	Glycine cleavage H-protein	29.41
Gene3D	no description	2.9e-48
HMMTigr	Glycine cleavage H-protein, subgroup	6.1e-68
PatternScan	2-oxo acid dehydrogenase, lipoyl-binding site	0

See the detailed result >

AT2G35120.1

Model type: Protein coding
Short Description: Single hybrid motif superfamily protein
Computational Description: Single hybrid motif superfamily protein; FUNCTIONS IN: glycine dehydrogenase (decarboxylating) activity, ATP binding; INVOLVED IN: glycine catabolic process, glycine decarboxylation via glycine cleavage system; LOCATED IN: mitochondrion, glycine cleavage complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), Single hybrid motif (InterPro:IPR011053), Glycine cleavage H-protein (InterPro:IPR002930), Glycine cleavage H-protein, subgroup (InterPro:IPR017453); BEST Arabidopsis thaliana protein match is: Single hybrid motif superfamily protein (TAIR:AT1G32470.1); Has 7147 Blast hits to 7147 proteins in 2201 species: Archae - 168; Bacteria - 4552; Metazoa - 187; Fungi - 130; Plants - 205; Viruses - 0; Other Eukaryotes - 1905 (source: NCBI BLink).
Link: InterPro Scan - TAIR

J023093J22 - Rice Full-length cDNAs - Original: J023093J22

full reading [+] show sequence

GACAACTCAT CTCATCACAT TCCATACACA CATCCATAGC AGCTTCAAGC 
TAAGGTGATA CTACTACATT CAGAGAGAAG AAGCAGAAAG AGATAAGAGG 
TTCTGAGAGA GACTGAGAGA GATGGGGAGG GCACCTTGCT GTGACAAGGC 
AACAGTGAAG AAGGGGCCAT GGTCACCTGA GGAGGATGCA ATGCTCAAGA 
ACTACATTGA GGAGCATGGC ACCGGTGGCA ACTGGATTGC ACTGCCTCAC 
AAGATTGGGC TGAAGAGGTG TGGCAAGAGC TGCAGGCTAA GGTGGCTGAA 
TTACCTGAGG CCAAACATAA AGCATGGGGA CTTCACCCCA GAGGAGGACA 
GCATCATCTG CAGCCTCTAC ATTAGCATAG GGAGCAGGTG GTCAATCATA 
GCAGCACAGC TGCCAGGGAG GACGGACAAC GATGTCAAGA ACTACTGGAA 
CACAAAGCTG AAGAAGAGAC TCCTTGGCCG GCGCAAGGAC CGCGGCGGCG 
GCCACCACCA CCGCAGCCAG AGCACCGCCG ACGATCTTCC GGCCGGTGGT 
GACGGCGGCA TGAACGACGG CGGCGGCGGC GGCGGAGAGC GGTCGCTGAG 
CGCGTCGGCG ATGGAGAGGA TCCAGCTCTG CATGCAGCTG CAGGAGCTGC 
AGAACCCACT GTCCATCCAC CACAACCCCT TGCTCTCTCA TCAGTGGCCA 
AGCAAGGCCA CCATTGATGA TCAGAATCAC AACAATGTCA CTGTGGCTGA 
ACATGGAATG TCAAGCTCTG TGAGCGACCA CCACCGCCTC GATGGGCAGC 
AGCTGGAGAG CGGCGCCGGC GCCGCCGCCA TGCAGCAGGC GTCGCCGTCG 
AGCGGCGGCG AGAACTCCAA CGTCGTCGTC GCCATCGAGG CCGAGCTCCA 
GGAGCTTCTC TACGCCGGCG GCGGCGCGAT CGTCGACGGC GGCGCGCCGC 
CGCAGGGGGA TGTGGACTGG TGGAGCTATG ATCAGGGAAA GCAGTCACCT 
GTGACTTGCT GGGATTTCAC CCCTGAAACC AGCTCCATCT TCCAGGATTA 
TGCAACAGTT TATGACATCT GAAAATTGTG AAGAGGTTTG ATAAGGATGT 
TAATTAGGGA GGTAATAATA ATAATAATAT AAATAGGGAT TGTCTAGCCT 
TTGTGTTCTT TGATCAGTGA CACCTAAAAC CAAACTGTAA GGAGTTTGTT 
GTAAGAAATT TGTAGCAAGG GATAAATAAA AAGGTATGGT AAAAAATATA 
TATACCAGGT CCAAGAGATG ATGTAATCTT GGCACCATTC TGGC

Gene models with high sequence identity

AT5G57620.1 [+] show detail - myb domain protein 36
E-value: 5e-63; Score: 238.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Homeodomain-like	1.2e-21
superfamily	Homeodomain-like	6.3e-13
Gene3D	Homeodomain-related	8.8e-14
Gene3D	Homeodomain-related	1.1e-15
HMMSmart	SANT, DNA-binding	4e-13
HMMSmart	SANT, DNA-binding	1.7e-11
ProfileScan	HTH transcriptional regulator, Myb-type, DNA-binding	21.497
ProfileScan	HTH transcriptional regulator, Myb-type, DNA-binding	13.796
HMMPfam	Myb, DNA-binding	7.2e-14
HMMPfam	Myb, DNA-binding	3.4e-10
HMMPanther	R2R3-MYB TRANSCRIPTION FACTOR	1.1e-80
HMMPanther	Myb transcription factor	1.1e-80

See the detailed result >

AT5G57620.1

Model type: Protein coding
Short Description: myb domain protein 36
Curator Summary: Encodes a putative transcription factor (MYB36).
Computational Description: myb domain protein 36 (MYB36); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 68 (TAIR:AT5G65790.1); Has 9119 Blast hits to 8411 proteins in 472 species: Archae - 0; Bacteria - 0; Metazoa - 823; Fungi - 478; Plants - 5914; Viruses - 3; Other Eukaryotes - 1901 (source: NCBI BLink).
Link: InterPro Scan - TAIR