K18742

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18742

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18742

Determination of introduced cDNA(s)

  • J023101D03 - Rice Full-length cDNAs - Original: J023101D03

    full reading [+] show sequence

    Nucleotide sequence: J023101D03 - full reading
    GCCACTCGAA GAGCTCGGCG GTGGAACAGC TCGCTCGATC ATGGCCGCCG 
    CCGCCGCCGC CTCAAGGGCG CTCTGGGCTT GCCGCACCGC CTCCTACCTT
    CGGATCTCCT CCTTCCCCAG GGCTTTCTCC ACCGTCCTTA AAGATCTAAA
    ATATGCTGAT ACTCATGAGT GGGTGAAGGT TGAGGGTGAT TCAGCAACCA
    TAGGGGTCAC AGACCATGCT CAGGACCATT TGGGTGATGT TGTGTATGTT
    GAGCTTCCAG AAGTTGGTTC CACAGTATCA CAAGGAACGA ACTTTGGTGC
    GGTTGAAAGT GTGAAAGCAA CCAGTGATAT CAATGCACCA GTATCTGGAG
    AGATTATTCA AGTAAATGAT GAACTAAGTG AAAAACCAGG ATTTATAAAT
    GGAAGTCCAT ATGAGAAGGG ATGGATCATC AAGGTTAAGA TAAGTGATCC
    AAGTGAGTTA AACTCGCTGA TGGATGATGA GAAGTACAAG AAGTTTTGTG
    AGGAAGAAGA TGGCAAACAC TGATCAATCC CCTAACTGCT GGATTTCAAG
    AAACTATGCA GCAACTCACC ATCATGACAA TGAGCCATCT CGCCTCTCCT
    ACCACATTAT ATTATTCTGG ATAGAGGAGT CCCAAGGAAT GTAATAAGCT
    GAAACATTTT TCTTGCAAAT CAGACATGAA AATTTTGTAG TGTCCTGATC
    ATTCCGTTTG TGCTCCATTT GAAATTCAGC TCTTGATTTG CTTATCATCT
    GAATACAGGT GGAGGATTGG GTTTGTTTAA ACTTTGATTA AGTGACAGTG
    ACTTGATTGT ATTGAGATTG C

    Gene models with high sequence identity

    1. AT2G35120.1 [+] show detail - Single hybrid motif superfamily protein
      E-value: 1e-57; Score: 219.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glycine cleavage H-protein 1.1e-49
    HMMPanther Glycine cleavage H-protein 2.4e-66
    superfamily Single hybrid motif 3.2e-48
    HAMAP Glycine cleavage H-protein 29.41
    Gene3D no description 2.9e-48
    HMMTigr Glycine cleavage H-protein, subgroup 6.1e-68
    PatternScan 2-oxo acid dehydrogenase, lipoyl-binding site 0

    See the detailed result >

    AT2G35120.1

    Model type
    Protein coding
    Short Description
    Single hybrid motif superfamily protein
    Computational Description
    Single hybrid motif superfamily protein; FUNCTIONS IN: glycine dehydrogenase (decarboxylating) activity, ATP binding; INVOLVED IN: glycine catabolic process, glycine decarboxylation via glycine cleavage system; LOCATED IN: mitochondrion, glycine cleavage complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), Single hybrid motif (InterPro:IPR011053), Glycine cleavage H-protein (InterPro:IPR002930), Glycine cleavage H-protein, subgroup (InterPro:IPR017453); BEST Arabidopsis thaliana protein match is: Single hybrid motif superfamily protein (TAIR:AT1G32470.1); Has 7147 Blast hits to 7147 proteins in 2201 species: Archae - 168; Bacteria - 4552; Metazoa - 187; Fungi - 130; Plants - 205; Viruses - 0; Other Eukaryotes - 1905 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR
  • J023093J22 - Rice Full-length cDNAs - Original: J023093J22

    full reading [+] show sequence

    Nucleotide sequence: J023093J22 - full reading
    GACAACTCAT CTCATCACAT TCCATACACA CATCCATAGC AGCTTCAAGC 
    TAAGGTGATA CTACTACATT CAGAGAGAAG AAGCAGAAAG AGATAAGAGG
    TTCTGAGAGA GACTGAGAGA GATGGGGAGG GCACCTTGCT GTGACAAGGC
    AACAGTGAAG AAGGGGCCAT GGTCACCTGA GGAGGATGCA ATGCTCAAGA
    ACTACATTGA GGAGCATGGC ACCGGTGGCA ACTGGATTGC ACTGCCTCAC
    AAGATTGGGC TGAAGAGGTG TGGCAAGAGC TGCAGGCTAA GGTGGCTGAA
    TTACCTGAGG CCAAACATAA AGCATGGGGA CTTCACCCCA GAGGAGGACA
    GCATCATCTG CAGCCTCTAC ATTAGCATAG GGAGCAGGTG GTCAATCATA
    GCAGCACAGC TGCCAGGGAG GACGGACAAC GATGTCAAGA ACTACTGGAA
    CACAAAGCTG AAGAAGAGAC TCCTTGGCCG GCGCAAGGAC CGCGGCGGCG
    GCCACCACCA CCGCAGCCAG AGCACCGCCG ACGATCTTCC GGCCGGTGGT
    GACGGCGGCA TGAACGACGG CGGCGGCGGC GGCGGAGAGC GGTCGCTGAG
    CGCGTCGGCG ATGGAGAGGA TCCAGCTCTG CATGCAGCTG CAGGAGCTGC
    AGAACCCACT GTCCATCCAC CACAACCCCT TGCTCTCTCA TCAGTGGCCA
    AGCAAGGCCA CCATTGATGA TCAGAATCAC AACAATGTCA CTGTGGCTGA
    ACATGGAATG TCAAGCTCTG TGAGCGACCA CCACCGCCTC GATGGGCAGC
    AGCTGGAGAG CGGCGCCGGC GCCGCCGCCA TGCAGCAGGC GTCGCCGTCG
    AGCGGCGGCG AGAACTCCAA CGTCGTCGTC GCCATCGAGG CCGAGCTCCA
    GGAGCTTCTC TACGCCGGCG GCGGCGCGAT CGTCGACGGC GGCGCGCCGC
    CGCAGGGGGA TGTGGACTGG TGGAGCTATG ATCAGGGAAA GCAGTCACCT
    GTGACTTGCT GGGATTTCAC CCCTGAAACC AGCTCCATCT TCCAGGATTA
    TGCAACAGTT TATGACATCT GAAAATTGTG AAGAGGTTTG ATAAGGATGT
    TAATTAGGGA GGTAATAATA ATAATAATAT AAATAGGGAT TGTCTAGCCT
    TTGTGTTCTT TGATCAGTGA CACCTAAAAC CAAACTGTAA GGAGTTTGTT
    GTAAGAAATT TGTAGCAAGG GATAAATAAA AAGGTATGGT AAAAAATATA
    TATACCAGGT CCAAGAGATG ATGTAATCTT GGCACCATTC TGGC

    Gene models with high sequence identity

    1. AT5G57620.1 [+] show detail - myb domain protein 36
      E-value: 5e-63; Score: 238.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Homeodomain-like 1.2e-21
    superfamily Homeodomain-like 0.00000000000063
    Gene3D Homeodomain-related 0.000000000000088
    Gene3D Homeodomain-related 0.0000000000000011
    HMMSmart SANT, DNA-binding 0.0000000000004
    HMMSmart SANT, DNA-binding 0.000000000017
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 21.497
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 13.796
    HMMPfam Myb, DNA-binding 0.000000000000072
    HMMPfam Myb, DNA-binding 0.00000000034
    HMMPanther R2R3-MYB TRANSCRIPTION FACTOR 1.1e-80
    HMMPanther Myb transcription factor 1.1e-80

    See the detailed result >

    AT5G57620.1

    Model type
    Protein coding
    Short Description
    myb domain protein 36
    Curator Summary
    Encodes a putative transcription factor (MYB36).
    Computational Description
    myb domain protein 36 (MYB36); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 68 (TAIR:AT5G65790.1); Has 9119 Blast hits to 8411 proteins in 472 species: Archae - 0; Bacteria - 0; Metazoa - 823; Fungi - 478; Plants - 5914; Viruses - 3; Other Eukaryotes - 1901 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR