K18811

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18811

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18811

Determination of introduced cDNA(s)

  • J033091L10 - Rice Full-length cDNAs - Original: J033091L10

    full reading [+] show sequence

    Nucleotide sequence: J033091L10 - full reading 
    GGCAGCCCGC ATCCCATCCC ATCGCATCGC GTCGCACCGC ACCGCACCGC 
    AACCCGCCCA AACCCTAACC CTCGCGCCAT CTCGTCCTCG CCGGCGTGCT 
    CCGCCGCCGC CGCCATGTCC GCCAGGCTGC TCCGGCGAGT GCTCCAGGAG 
    CGGGAGACCG CCCCGCAGGA CCCTGCCGCC GCCGCCGCCG CCGCAGAGGT 
    CGAGCGGGAG GAGGAGGAGG AGGCCTCCCC TCCCCGTGTC GCCGCCAGGA 
    ACCCCTTCGA TCTCCTCGAC GAAGAGGAGG AGGAAGAGGA GGAGAAGGAA 
    GATGAAGTGT ATTCTGAGCA ACCTGTGAGT TACAACGAAC AGAAACATTC 
    TGTGAACAAG AAGCCTGGCA ATGCTGTTCC TGAAACAAAC AAGAAATCAA 
    AGAAAAAGAA GAAAAAGAGC AAGGCAGACA AACAAGTGTC AACAAAGTCA 
    AGGGATGAAA AGTCACTGGA TTCAATTCTG GAAGATTTAT CTATTGAAAA 
    GAAGCCCATG CAGCAAAGAG TTAATCAAAA TGAAAGAGCA TCTGGGAAGG 
    AGATTGAGAT AGATGAAACC ACTCCTGGGA CATCATCTAT TCTCTCAATT 
    GATCCCAAAC ATCTAAAAGC TGAAAATGAG ATGAGGCGCA TTTTTGGATC 
    AAAAGTAGTG GATTCACTTG AAAATCAACG GAATGTGCCT AGCAGTTCAA 
    CATCAAGGCT ACGAGGTGTT AGGCGCGTTG CCCACAATCC AAGAAAAACC 
    CTTCTTGTTA CTCCATCTAG CTACTGGCCA CCATGGGATA AATCAATGTC 
    AATGGATATT GTGGAGACAA AGAGTGGTTT CAACTATTTC AGGTACATAT 
    ATGATCCTTC TGTCAGTCAT GTGCAAGACT TGTTTGAAGT TGCCAAATCT 
    GCAAATGATC TCAATGCTAT TGCAGCTATA TTAGCAAAGT ACCCTTATCA 
    CCCAGAATCA TTGTTAACAT TTGCTGAACT TTTCAAATAT TCTGGAGAAC 
    ATCAATCGTC AGCAGATGCT GTTGAGAAGT GTCTATTTGC TCTGGAGTGT 
    GCTTGGCATC CATTGTTTAG CCCACTGCAC AGCAACTGCC AGCTGAAATA 
    TAGCCATGAC ACAAACAAGC CATTCTTTAC TGCGCTTTTT AGTCACATGA 
    AAAATTTGGA TAGACGTGGC TGCCATCGGT CTGCTTTAGA GGTCTGCAAA 
    TTCCTTCTTT CATTGGATTC TGATGATCCA AAGGGTGCTC TATTCTGCAT 
    TGATTACTTT GCTCTAAGAT CACAACAGTA CAAATGGTTG GAACAGTTTG 
    CAGAAGAGTA CCAGTGTGAT AACTCCTTGT GGTTATTCCC TAATTTCTCA 
    TTTTCCCTTG CCATTGCACG GTTCTACGTT GAGCGTGATG CAACAAATGG 
    GGAGGCTTCT GACCATTCTG ACAAGTCAAC ATCTGTAGAT CTCATGAAGC 
    AAGCATTGAT GCTTCATCCT TTGGTGCTGC GCAAGATTGT TGACAAGGCT 
    CCTTTGAAAG ACTCCTCGTG GACCCAAATA CTCAGGAATG TGTTCTTTGG 
    ATCAGCAAAG CCAGGAAGCC CTTCCCTTGA GCATATGATT AGCATATATG 
    TTGAACGCCA TTACATCATG TGGAGGTTCC CAGAACTGCA GAATTTACTC 
    AAAGATGCTG CTCTTTTGGT GATTGAATCA CTAAAACAGG ATAACAGAGA 
    GGCCCAGGAC TGGGCATGTG TTAGAAAAGA AGCATTCTCT TCAGATAAGA 
    ATGAGTACTC TCATCTTCTT GTTTCAGACT TCTCCGACAC AACACCATCA 
    CTCCCCCCTG AAGAATTGCG GCCATTCATG GTTGCTCCTG GAATGGCACA 
    TGAGATGCCG CCAGCTGAAC AAGAACTGGG GATTGAGGTC AGACCCCGTG 
    CCCCCCGTGA AGTTGCAGGG CGCAATCCTG CGTTGGTTTT CCTGGAATCA 
    CTGCTCCCGT GGGTTGACTA TGGTGACAAT CATCATGACG AAAATGACCA 
    AAACAATGAT GACTGATTCA ACCCAAAGCA CCAAGTGGCA TGGATGCCTA 
    GTTAGCAGAA CAAGACTTAA ATTGCACCCA TGTGCTTTCC TGTCTCTATG 
    ATGATTAACA CAAATTGCTG TCAATCATTG TATCACCTTC ACACTCTCAA 
    GCAACAATCA TCAGAAACTA GTGCTCTAGT ACTTTTCATG GTTTCGGCAT 
    ACATGTATAG CTGATCCACC AAAATCTAAA TCGCTGAAAT ATTAAGTCAA 
    TTTTGGGCCT GGAAACATGA GAGATCAATG TGTCAATTTC TGC

    Gene models with high sequence identity

    1. AT2G46900.1 [+] show detail - CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix, Nulp1-type (InterPro:IPR006994); Has 2929 Bla...
      E-value: 1e-144; Score: 511.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Basic helix-loop-helix, Nulp1-type 7e-86
    HMMPfam Basic helix-loop-helix, Nulp1-type 3.3e-79

    See the detailed result >

    AT2G46900.1

    Model type
    Protein coding
    Computational Description
    CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix, Nulp1-type (InterPro:IPR006994); Has 2929 Blast hits to 2464 proteins in 333 species: Archae - 2; Bacteria - 151; Metazoa - 913; Fungi - 372; Plants - 141; Viruses - 47; Other Eukaryotes - 1303 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR