K18811

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18811

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18811

Determination of introduced cDNA(s)

  • J033091L10 - Rice Full-length cDNAs - Original: J033091L10

    full reading [+] show sequence

    Nucleotide sequence: J033091L10 - full reading
    GGCAGCCCGC ATCCCATCCC ATCGCATCGC GTCGCACCGC ACCGCACCGC 
    AACCCGCCCA AACCCTAACC CTCGCGCCAT CTCGTCCTCG CCGGCGTGCT
    CCGCCGCCGC CGCCATGTCC GCCAGGCTGC TCCGGCGAGT GCTCCAGGAG
    CGGGAGACCG CCCCGCAGGA CCCTGCCGCC GCCGCCGCCG CCGCAGAGGT
    CGAGCGGGAG GAGGAGGAGG AGGCCTCCCC TCCCCGTGTC GCCGCCAGGA
    ACCCCTTCGA TCTCCTCGAC GAAGAGGAGG AGGAAGAGGA GGAGAAGGAA
    GATGAAGTGT ATTCTGAGCA ACCTGTGAGT TACAACGAAC AGAAACATTC
    TGTGAACAAG AAGCCTGGCA ATGCTGTTCC TGAAACAAAC AAGAAATCAA
    AGAAAAAGAA GAAAAAGAGC AAGGCAGACA AACAAGTGTC AACAAAGTCA
    AGGGATGAAA AGTCACTGGA TTCAATTCTG GAAGATTTAT CTATTGAAAA
    GAAGCCCATG CAGCAAAGAG TTAATCAAAA TGAAAGAGCA TCTGGGAAGG
    AGATTGAGAT AGATGAAACC ACTCCTGGGA CATCATCTAT TCTCTCAATT
    GATCCCAAAC ATCTAAAAGC TGAAAATGAG ATGAGGCGCA TTTTTGGATC
    AAAAGTAGTG GATTCACTTG AAAATCAACG GAATGTGCCT AGCAGTTCAA
    CATCAAGGCT ACGAGGTGTT AGGCGCGTTG CCCACAATCC AAGAAAAACC
    CTTCTTGTTA CTCCATCTAG CTACTGGCCA CCATGGGATA AATCAATGTC
    AATGGATATT GTGGAGACAA AGAGTGGTTT CAACTATTTC AGGTACATAT
    ATGATCCTTC TGTCAGTCAT GTGCAAGACT TGTTTGAAGT TGCCAAATCT
    GCAAATGATC TCAATGCTAT TGCAGCTATA TTAGCAAAGT ACCCTTATCA
    CCCAGAATCA TTGTTAACAT TTGCTGAACT TTTCAAATAT TCTGGAGAAC
    ATCAATCGTC AGCAGATGCT GTTGAGAAGT GTCTATTTGC TCTGGAGTGT
    GCTTGGCATC CATTGTTTAG CCCACTGCAC AGCAACTGCC AGCTGAAATA
    TAGCCATGAC ACAAACAAGC CATTCTTTAC TGCGCTTTTT AGTCACATGA
    AAAATTTGGA TAGACGTGGC TGCCATCGGT CTGCTTTAGA GGTCTGCAAA
    TTCCTTCTTT CATTGGATTC TGATGATCCA AAGGGTGCTC TATTCTGCAT
    TGATTACTTT GCTCTAAGAT CACAACAGTA CAAATGGTTG GAACAGTTTG
    CAGAAGAGTA CCAGTGTGAT AACTCCTTGT GGTTATTCCC TAATTTCTCA
    TTTTCCCTTG CCATTGCACG GTTCTACGTT GAGCGTGATG CAACAAATGG
    GGAGGCTTCT GACCATTCTG ACAAGTCAAC ATCTGTAGAT CTCATGAAGC
    AAGCATTGAT GCTTCATCCT TTGGTGCTGC GCAAGATTGT TGACAAGGCT
    CCTTTGAAAG ACTCCTCGTG GACCCAAATA CTCAGGAATG TGTTCTTTGG
    ATCAGCAAAG CCAGGAAGCC CTTCCCTTGA GCATATGATT AGCATATATG
    TTGAACGCCA TTACATCATG TGGAGGTTCC CAGAACTGCA GAATTTACTC
    AAAGATGCTG CTCTTTTGGT GATTGAATCA CTAAAACAGG ATAACAGAGA
    GGCCCAGGAC TGGGCATGTG TTAGAAAAGA AGCATTCTCT TCAGATAAGA
    ATGAGTACTC TCATCTTCTT GTTTCAGACT TCTCCGACAC AACACCATCA
    CTCCCCCCTG AAGAATTGCG GCCATTCATG GTTGCTCCTG GAATGGCACA
    TGAGATGCCG CCAGCTGAAC AAGAACTGGG GATTGAGGTC AGACCCCGTG
    CCCCCCGTGA AGTTGCAGGG CGCAATCCTG CGTTGGTTTT CCTGGAATCA
    CTGCTCCCGT GGGTTGACTA TGGTGACAAT CATCATGACG AAAATGACCA
    AAACAATGAT GACTGATTCA ACCCAAAGCA CCAAGTGGCA TGGATGCCTA
    GTTAGCAGAA CAAGACTTAA ATTGCACCCA TGTGCTTTCC TGTCTCTATG
    ATGATTAACA CAAATTGCTG TCAATCATTG TATCACCTTC ACACTCTCAA
    GCAACAATCA TCAGAAACTA GTGCTCTAGT ACTTTTCATG GTTTCGGCAT
    ACATGTATAG CTGATCCACC AAAATCTAAA TCGCTGAAAT ATTAAGTCAA
    TTTTGGGCCT GGAAACATGA GAGATCAATG TGTCAATTTC TGC

    Gene models with high sequence identity

    1. AT2G46900.1 [+] show detail - CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix, Nulp1-type (InterPro:IPR006994); Has 2929 Bla...
      E-value: 1e-144; Score: 511.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Basic helix-loop-helix, Nulp1-type 7e-86
    HMMPfam Basic helix-loop-helix, Nulp1-type 3.3e-79

    See the detailed result >

    AT2G46900.1

    Model type
    Protein coding
    Computational Description
    CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix, Nulp1-type (InterPro:IPR006994); Has 2929 Blast hits to 2464 proteins in 333 species: Archae - 2; Bacteria - 151; Metazoa - 913; Fungi - 372; Plants - 141; Viruses - 47; Other Eukaryotes - 1303 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR