K18819

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18819

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18819

Determination of introduced cDNA(s)

  • J013002O01 - Rice Full-length cDNAs - Original: J013002O01

    full reading [+] show sequence

    Nucleotide sequence: J013002O01 - full reading 
    GGGAACTCTC TCCCCGAGCA CCGCCAAGCA GCTCTCCACT CCCACCATGC 
    TGCTGCTCCA CTCCTCTCCG CGCCTCCTCC TCCGCCACCG CCTCCTCCTC 
    CCCCCGTCCC GCGACCTCCT CCCCGCCGCC TCCGCCTCCG CCCTCCGCCT 
    CCGCCGCTCC GTCGCCGTCC GCGCCGAGCC GGAGCTGTCC ACCTCGGCAG 
    CCGAGCCTCC CCCGGGCGAC GACGGCGAGG GAGATGGCCC CGTGGAGCTC 
    CGCACCCCGA CGCTCTTCTC CATCGACGAG AACCCCACCC CGCTGCAGAC 
    CGCCACCAGC GTCCTCCTCA CCGGCGCCAT CTCCGTCTTC CTCTTCCGCT 
    CCATCCGCCG CCGCGTCCGC CGCGCCAAGG AGCTCAGGGT TCGGTCCGGC 
    GGGGTGGAGA AGCCCAACAA CCTGAGCAAG GAGGCCCTGG AGGGGCTGAG 
    GCTGGTGAGC GCGTCGCCGA TCGAGGTCGA CAAGCCGCCG TCGCCCGTGC 
    AGGCGCTGCT CGGCGGGATC GCCGCGGGGG TCATCGCGCT CATCCTCTAC 
    AAGTTCACCA CCACCATCGA GGCCGCGCTC AACCGCCAGA CCATCTCCGA 
    CAGCTTCTCG GTTCGTCAAA TAACAATAAC AATAAGAACA ATTATAAATG 
    GGATATGCTA CCTAGCAACA TTTGTGTTTG GAATCAACTC AATTGGATTA 
    GTACTCTATG GTCTCCAGCT CACTTTTGCT TCTATCATGG GCGATGACAA 
    TTCCAGCAGC GCTGCAGAGA AAATCAGTGA GCAGTCCAAC ACAATGGCAT 
    CATCTAATAG CTCCACAGAT TCAACAAGTG ACAACGAATC AACTAGCAAT 
    GATAAGAGTA AAGGGTAGCT GGAGTGGACC GTGCAAATGC ACTAGCCAAA 
    TCTTGGAGTA CATACAATTG GATAATCTTT GTGGGCATTT AGTTTTCTCA 
    TCTTGAGCTG TAGTGTCATT GTATAGCGCA AATATGGACC AATTGAATTG 
    CAATTACTGT AGTAACATTT CGGCTGAACA TGTACAAAGA AAAAAGGTAG 
    CAAGCAGTTT TTTTGGGGAC ACTTTCTGAT TGCAACTGGA TGAATATTTT 
    TGGCAGAATC TACCCTTGTA CTTGTGGAAT AACATTATAA TGACCCTTTG 
    CTGTGAAAAT ACCATCTTTT AGAAGCCTGA TGCTCGTGTT GTGTTCATGG 
    AAGATGGCAG ATTGCAGGGA TATTTGGCGA TAGTATGGGC GCGGTTCACT 
    TGTGGTTACC CAACTTGACC TTGCTCTTGT TTTACAAGAT CAGCTATAAA 
    ATGTGTTCTT TCTGATGC

    Gene models with high sequence identity

    1. AT3G15110.1 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...
      E-value: 3e-27; Score: 120.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan PRICHEXTENSN 1.1e-09
    FPrintScan PRICHEXTENSN 1.1e-09
    FPrintScan PRICHEXTENSN 1.1e-09
    FPrintScan PRICHEXTENSN 1.1e-09
    HMMPfam Protein of unknown function DUF3082 3.8e-24

    See the detailed result >

    AT3G15110.1

    Model type
    Protein coding
    Computational Description
    unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3082 (InterPro:IPR021434); Has 77 Blast hits to 77 proteins in 38 species: Archae - 0; Bacteria - 37; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR