K18902

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small) decreased length (PATO:0000574) (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18902

Determination of introduced cDNA(s)

J023049D17 - Rice Full-length cDNAs - Original: J023049D17

full reading [+] show sequence

GAGGCAGAAG CAGGAGGAAG ACGAAGAGGA ATATATCTGA GTAGTGGAGT 
CCAAGGAAAG GAACCAACTG ACCTTAGCTT AGCTTACCTT AGCTCAACCC 
CAAGCTTGAA GCTTCCACTA TAAGAACTCA CCCAGCCACA CGGCTACTTG 
GACGACGAAG CAGCAGCAGC AGCAGTAAAC AGCATCGCTC GCTCGTCTTC 
GTCGTCGTCG ATCGGCTCCG GTGAGGGTGA TCGGTCGCCG GCAGAGGCTT 
CTGATGCTGG AGAGGCCGCC GATCCTGAAG AGATACCGCG CACCGGGGTG 
GGCAGTGGTG GCTCGCTGGA AATGTCGTCG CAGCAGCAGC ACGCCGGTGA 
GGCCCCCGCC TCCGCCGCCG CCGCTGCCCG GGCGCGGCTC AGGTGGACCG 
GGCAGCTGCA CGAGCGGTTC GTCCTCGCCG TGGCGGAGCT CGGCGGCGCG 
GACAGGGCGA CGCCCAAGTC CGTGCTGAGG GCCATGGCCG TGCCGGGGCT 
CACCTTGTAC CACCTCAAGA GCCACCTCCA GAAGTACCGG CAGGCGGTGA 
GCCGCGGCGG CAATGGAGGC GGCGGAGGCA GCGGCAGCCT GAACGACCGG 
TCATCCTCGT CGGAGCGCCA ACCAGCCGAC CACGACGGCG ATAGCGCCGC 
CGATGAGCCG CGCACCATTG CTTACGACGG CGACAGCGAT GGCGATGCTA 
AAGAAGGTCT CCGTGATTCA TCCAGGAGCA TGGTGCAGAT GCAGAGGGAA 
GTCCAGAGGA AGCTCCAGGA GCAGATTGAG GTCAAGAGGC ATCTGCAACT 
GAGGATGGAG GCACAGGGGA GGTACCTGCA GTCAGTGCTA CGCAGGGCGC 
AGCAAGTCCT GGCCGACCAT AGCCTGGCAA GCTCGCCGGA GGCCGCCACG 
GCGGAGCTCT CGGAGCTCGC CTCCGCCGTG GACATCGAGT GCATGTCCTC 
CTCCTCCCCG CCGCGGCACC ACCGCCAATC CGCCGCAACC GACAGCTGCG 
TGACTACGAC GTCGTCGTCG GAGGCCGAGA GCAAGGCCGC CGGGTCCAAG 
CGGCTCCACA CCAGCGATTG CACCGTCGAG CAGCCGGTGC AGGGCAAGAG 
GGCCTTCAAC TTCCTGCAAA GGCACAACCA GGCAGATCAA GAAGAAGAAC 
AAGAAGAAGA ATATGCAGGA GCAGAGGATG GAAGCTCATC AGAGATTGAT 
CTGAACAGGT AGAGGCAGAG GAGGAAGAGA AGCAGCAGAA GCATCTGTGA 
TGATGTGCTG CTGTGCATTG CTGCAGTGGA TGATTGGTGG GGTGGCCTTC 
AAGGCTGGGG CCAAGCAACC AGGCTTTTGA GCAATGTCTG CCTGCTACTG 
CAACAGCTAC TGCTGCTGCT ACTCCTCATT CTATGATGAT ATATGTTTTA 
CTTTAACTTA TATATATATA TATATATATA TATATATATA GCTATGCAAG 
CATCTGGTTC TTGTGTTTCA CGTACCTGTA AAAAAAAATG GAATTCGAAT 
TGGTGGCTGG CCCAGCTGCA GATGCATGTG GCATGCTTGA GGTGCAAGAA 
TATATAGAAC TGTAGTAGTG TGGATTATGC AGCTAGTGAA TGATGCTTTA 
GGGACCAATG GGATTTCCAT GAAAGATGGA ATTGGTTTGC AGTGTAATTT 
AAAGAGCAAG GTTGATTTTT CACAGCTGAG CTCAGTGTGG ATCAAAGTTT 
AGTTACAGTG ATTGGAAGTT AATATGTTAG TAACAAGAGC AGTAAATAAA 
TCAGTTTGCA GTG

Gene models with high sequence identity

AT1G79430.2 [+] show detail - Homeodomain-like superfamily protein
E-value: 4e-33; Score: 140.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	Homeodomain-related	1.50000306971104e-18
HMMPfam	Myb, DNA-binding	3.90000000000001e-10
HMMTigr	Myb-like DNA-binding domain, SHAQKYF class	5.10001002358244e-21
superfamily	Homeodomain-like	5.50000546509999e-16
Coil	coiled-coil	0

See the detailed result >

AT1G79430.2

Model type: Protein coding
Short Description: Homeodomain-like superfamily protein
Curator Summary: Encodes gene product that is required for several aspects of phloem development in the root: (1) the specific divisions organizing the phloem pole, (2) sieve element differentiation and (3) the expression of a companion-specific gene. Mutant has a defect in the organization of phloem poles in the root. apl seedlings have a short, determinate root with only occasional lateral branches.
Computational Description: ALTERED PHLOEM DEVELOPMENT (APL); CONTAINS InterPro DOMAIN/s: Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G12730.1); Has 1662 Blast hits to 1649 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1644; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
Link: InterPro Scan - TAIR