K18907

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18907

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18907

Determination of introduced cDNA(s)

  • J023101D03 - Rice Full-length cDNAs - Original: J023101D03

    full reading [+] show sequence

    Nucleotide sequence: J023101D03 - full reading 
    GCCACTCGAA GAGCTCGGCG GTGGAACAGC TCGCTCGATC ATGGCCGCCG 
    CCGCCGCCGC CTCAAGGGCG CTCTGGGCTT GCCGCACCGC CTCCTACCTT 
    CGGATCTCCT CCTTCCCCAG GGCTTTCTCC ACCGTCCTTA AAGATCTAAA 
    ATATGCTGAT ACTCATGAGT GGGTGAAGGT TGAGGGTGAT TCAGCAACCA 
    TAGGGGTCAC AGACCATGCT CAGGACCATT TGGGTGATGT TGTGTATGTT 
    GAGCTTCCAG AAGTTGGTTC CACAGTATCA CAAGGAACGA ACTTTGGTGC 
    GGTTGAAAGT GTGAAAGCAA CCAGTGATAT CAATGCACCA GTATCTGGAG 
    AGATTATTCA AGTAAATGAT GAACTAAGTG AAAAACCAGG ATTTATAAAT 
    GGAAGTCCAT ATGAGAAGGG ATGGATCATC AAGGTTAAGA TAAGTGATCC 
    AAGTGAGTTA AACTCGCTGA TGGATGATGA GAAGTACAAG AAGTTTTGTG 
    AGGAAGAAGA TGGCAAACAC TGATCAATCC CCTAACTGCT GGATTTCAAG 
    AAACTATGCA GCAACTCACC ATCATGACAA TGAGCCATCT CGCCTCTCCT 
    ACCACATTAT ATTATTCTGG ATAGAGGAGT CCCAAGGAAT GTAATAAGCT 
    GAAACATTTT TCTTGCAAAT CAGACATGAA AATTTTGTAG TGTCCTGATC 
    ATTCCGTTTG TGCTCCATTT GAAATTCAGC TCTTGATTTG CTTATCATCT 
    GAATACAGGT GGAGGATTGG GTTTGTTTAA ACTTTGATTA AGTGACAGTG 
    ACTTGATTGT ATTGAGATTG C

    Gene models with high sequence identity

    1. AT2G35120.1 [+] show detail - Single hybrid motif superfamily protein
      E-value: 1e-57; Score: 219.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glycine cleavage H-protein 1.1e-49
    HMMPanther Glycine cleavage H-protein 2.4e-66
    superfamily Single hybrid motif 3.2e-48
    HAMAP Glycine cleavage H-protein 29.41
    Gene3D no description 2.9e-48
    HMMTigr Glycine cleavage H-protein, subgroup 6.1e-68
    PatternScan 2-oxo acid dehydrogenase, lipoyl-binding site 0

    See the detailed result >

    AT2G35120.1

    Model type
    Protein coding
    Short Description
    Single hybrid motif superfamily protein
    Computational Description
    Single hybrid motif superfamily protein; FUNCTIONS IN: glycine dehydrogenase (decarboxylating) activity, ATP binding; INVOLVED IN: glycine catabolic process, glycine decarboxylation via glycine cleavage system; LOCATED IN: mitochondrion, glycine cleavage complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), Single hybrid motif (InterPro:IPR011053), Glycine cleavage H-protein (InterPro:IPR002930), Glycine cleavage H-protein, subgroup (InterPro:IPR017453); BEST Arabidopsis thaliana protein match is: Single hybrid motif superfamily protein (TAIR:AT1G32470.1); Has 7147 Blast hits to 7147 proteins in 2201 species: Archae - 168; Bacteria - 4552; Metazoa - 187; Fungi - 130; Plants - 205; Viruses - 0; Other Eukaryotes - 1905 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR