K18915

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18915

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18915

Determination of introduced cDNA(s)

  • J023042N11 - Rice Full-length cDNAs - Original: J023042N11

    full reading [+] show sequence

    Nucleotide sequence: J023042N11 - full reading
    GGTACTCAAG CCGGAGGCAG CACACTGCAA CTTAAGTTTT TCTATAGCTC 
    CTAGCAAGCT AGCAATGGCT CCCTCGGTGA TGGCTTCGTC GGCCACCTCC
    GTGGCTCCCT TCCAGGGGCT CAAGTCCACT GCGGGCCTCC CGGTGAACCG
    CCGCTCCAGC AGCTCGAGCT TTGGCAACGT CAGCAATGGC GGAAGGATCA
    GATGCATGCA GGTGTGGCCG ATTGAGGGCA TTAAGAAGTT CGAGACTCTG
    TCGTACTTGC CGCCATTGAC AGTGGAGGAC CTTTTGAAGC AGATCGAGTA
    CCTGCTCCGA TCTAAGTGGG TGCCTTGCTT GGAGTTCAGC AAGGTCGGAT
    TCGTCTACCG TGAGAATCAC AGATCACCCG GATACTATGA CGGTAGGTAC
    TGGACCATGT GGAAACTGCC CATGTTTGGA TGCACCGATG CCACCCAAGT
    GCTCAAGGAG CTCGAGGAGG CAAAGAAGGC ATACCCTGAT GCCTTCGTTC
    GCATCATTGG CTTTGACAAC GTTAGGCAGG TGCAGTTAAT CAGCTTCATC
    GCGTATAAGC CACCGGGTTG CGAGGAGTCA GGCGGCAACT AAGCGCTTTC
    GTTCCTTCGT GCATGTTCTT TCTTTTTCTT TTTTTTTTTG TGTGTCCGTG
    TTAAGCTGCA CGTAATTGTT CTCTCGCGCT CCGACCTGCC GTTGTTGCAA
    GAGTACTACT ACAACTATCG GTCTATCGTT CGGTGACGGT GAGACAGGGC
    ACGTGAATGC AAGATCTCCG GCTATACACA CGTACTCATG TAATATGATG
    CCTAGAGCAT ATCTGAATCC GTCGACAATG AAATTTTGGT TTTGC

    Gene models with high sequence identity

    1. AT1G67090.1 [+] show detail - ribulose bisphosphate carboxylase small chain 1A
      E-value: 1e-57; Score: 219.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Ribulose bisphosphate carboxylase, small chain 7.1e-50
    FPrintScan Ribulose bisphosphate carboxylase, small chain 3e-66
    FPrintScan Ribulose bisphosphate carboxylase, small chain 3e-66
    FPrintScan Ribulose bisphosphate carboxylase, small chain 3e-66
    FPrintScan Ribulose bisphosphate carboxylase, small chain 3e-66
    FPrintScan Ribulose bisphosphate carboxylase, small chain 3e-66
    FPrintScan Ribulose bisphosphate carboxylase, small chain 3e-66
    HMMPfam Ribulose bisphosphate carboxylase, small chain 1.2e-38
    HMMPfam RbcS 0.00000027
    Gene3D Ribulose bisphosphate carboxylase, small chain 6.5e-54

    See the detailed result >

    AT1G67090.1

    Model type
    Protein coding
    Short Description
    ribulose bisphosphate carboxylase small chain 1A
    Computational Description
    ribulose bisphosphate carboxylase small chain 1A (RBCS1A); FUNCTIONS IN: ribulose-bisphosphate carboxylase activity, copper ion binding; INVOLVED IN: carbon fixation, response to cold, response to blue light, response to red light, response to far red light; LOCATED IN: in 10 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seedling growth; CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase, small chain (InterPro:IPR000894); BEST Arabidopsis thaliana protein match is: Ribulose bisphosphate carboxylase (small chain) family protein (TAIR:AT5G38430.1); Has 1998 Blast hits to 1975 proteins in 459 species: Archae - 0; Bacteria - 424; Metazoa - 0; Fungi - 0; Plants - 969; Viruses - 0; Other Eukaryotes - 605 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR