K18923

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18923

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18923

Determination of introduced cDNA(s)

  • J013135K11 - Rice Full-length cDNAs - Original: J013135K11

    full reading [+] show sequence

    Nucleotide sequence: J013135K11 - full reading
    GTGTCGGGCG CGCGCATACA CCAGCAAATT GCCAAATCCT AGCGTCGAAA 
    GCGCCCCCAG ACCACGAGCC AGTCAGAGAC GGATCTGGCC GGCCGATGCG
    CGCGTGAGGC ATCGTCAGCC AGAGCCAGCT AGTGTGTTTG TGTGTGTCAC
    TGTGGTGGTG TGTGGCCTGT CACCTCACCT GATCCAACAC AAGCGCGAGG
    AGGCGAAGGC GATGCTGCAG CGGTTGGGCA TCGGGGGCCG CGCGGCGGAG
    GAGACCGAGC CGGCGCGCTT CGCCTTCGCC GACGCCCTCC CGGCATGGCC
    GCAAGGTGGT GGGTTTGCGA CGGGGAGGAT CTGCGTGGGG GAGCTGGAGC
    TCGCGGCGGT CACCGCGTTC GAGAAGATCT GCGCCCTGTC GGCGACGAAG
    GGCGGCGGCG GCGGCGTCAC GTTCTACAGG CCGGCCGGCG TGCCGGGGGG
    GTTCTCCGTG CTCGGCCATT ACTGCCAGTC CAACACACGC CCGCTCCACG
    GCCACCTGCT CGTCGCCAAG GCGGTGGCGG GCAAGCCGGA GTCGGAGTCG
    CTGCCGCCTC TCCGGCCGCC GCACGACTAC GAGCTCGTGT GCGCGTTCCG
    CGCCGATGGC GTCGGGGAGG ACAGGAAGTC TTGCCGTGGG TACGGCCGCA
    CCGGCGCCTA CTTCTGGCTT CCCGTGCCGA CGGATGGGTA CCGGGCGCTC
    GGGCTGCTCG TCACGGCTGA GCCCGACAAG CCGCCGCTCA GGGAGGTGGC
    GTGCGCCCGC GCGGACCTCA CCGACGAGTG CGAGCCCCAC GGGTCGCTGC
    TGCAGCTCCA GCTCGTGGGG CAATCGGCGT GCTGGTCGTC GTCGACGGTC
    CCAGCGGCGT TCGCCCTGCG TGGCATCAGG CCGACGCACC GGGGGATGTG
    GGGGCGGGGC ATCGGCGCCG GGACGTTCTG CTGCGGCGCG GTGGGGCTGT
    CGCCGCGGGA GCAGGGCATG GCGTGCCTCA AGAACGTGGA CCTCGACCTG
    TCGGCGATGC CGACGCTGGA GCAGGCGCAC GCGGTGATCC GCCACTACGG
    CCCGACGCTG TACTTCCACC CCAAGGAGGT GTACCTCCCG TCGTCCGTCT
    CCTGGTTCTT CAAGAACGGC GCCGCGCTGT GCAAGAAAGG GGAGGACGCC
    GCCGTGGAGC TCGACGTTGA GGGGTCCCAC CTCCCGTGCG GCGAGTGCAA
    CGACGGCGAG TACTGGATCG GCCTGCCGGA CGGCAAGCGT GGGGAGTCCA
    TCATCTACGG CGACATCGAC AGCGCGGAGC TGTACGCGCA CGTGAAGCCG
    GCGATGGGCG GGACGTGCAC CGACGTCGCC ATGTGGGTGT TCTGCCCGTT
    CAATGGCCCG GCCAGGTTCA AGTTGGGGCC GATCACCATC CCGCTCGGCA
    AGACCGGGCA GCACATCGGC GACTGGGAGC ACTTCACGCT CCGCGTCAGC
    AACTTCACCG GCGAGCTCAT GGCCGTCTAC TTCTCGCAGC ACAGCGGCGG
    GCGGTGGGTG GACGCGTCCG CGCTCGAGTA CACCGCGGGG AACAAGCCGG
    CGGTGTACTC CTCCCGGAAC GGCCACGCCA GCTACCCGTT CCCGGGCGTG
    TACCTGCAGG GGTCGGCGGC GCTCGGGATC GGCATCCGGA ACGACGCGGC
    GCGGAGCGAG CTGGCCGTGG ATTCCAGCGC CAAGTACAGG ATCGTGGCGG
    CGGAGTACCT CGGCGAGGGC GCCGTGGAGG AGCCGCGGTG GCTCAACTTC
    ATGAGGGTGT GGGGGCCGAC GGTGGTGTAC AAGTCGAGGC AGAGGATGGA
    GCGGATGACG AGCGCGATGC ACCGCCGGCT GAGGAGCCCC GCAGAGAGGA
    TGCTGAACAA GCTGCCCAAC GAGCTGTCCA GGGAGGAGGG GCCGACGGGG
    CCCAAGGAGA AGAACAACTG GGAAGGGGAC GAGCGATGGT AGGAGGCTGA
    GGATTTGTCA TTTGTGCTTT GGTGTGTCTG TTTGTTTCGT TTTGGTTCAG
    GTGTTTTACG GTTACTGGAG CAGCTTGTAC TGTGACAGAG ATGTAGTACT
    ACGTGATTAT TATTCATGAT TGAGGGAACA GATTTGCTAT TGTTTGTACT
    TTGTAGGCTA TTATTATACT GTCCACTACT ACTACAGTAC GTGAGAACAA
    GGGACTACCT ACTTGAGTAT TTTGCC

    Gene models with high sequence identity

    1. AT5G43950.1 [+] show detail - Plant protein of unknown function (DUF946)
      E-value: 4e-162; Score: 568.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PRE-MRNA PROCESSING-RELATED 1.9e-248
    HMMPanther PRE-MRNA PROCESSING PROTEIN PRP39-RELATED 1.9e-248
    HMMPfam Protein of unknown function DUF946 1.1e-241

    See the detailed result >

    AT5G43950.1

    Model type
    Protein coding
    Short Description
    Plant protein of unknown function (DUF946)
    Computational Description
    Plant protein of unknown function (DUF946); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF946 (InterPro:IPR009291); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF946) (TAIR:AT1G04090.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR