K18923

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small) decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18923

Determination of introduced cDNA(s)

J013135K11 - Rice Full-length cDNAs - Original: J013135K11

full reading [+] show sequence

GTGTCGGGCG CGCGCATACA CCAGCAAATT GCCAAATCCT AGCGTCGAAA 
GCGCCCCCAG ACCACGAGCC AGTCAGAGAC GGATCTGGCC GGCCGATGCG 
CGCGTGAGGC ATCGTCAGCC AGAGCCAGCT AGTGTGTTTG TGTGTGTCAC 
TGTGGTGGTG TGTGGCCTGT CACCTCACCT GATCCAACAC AAGCGCGAGG 
AGGCGAAGGC GATGCTGCAG CGGTTGGGCA TCGGGGGCCG CGCGGCGGAG 
GAGACCGAGC CGGCGCGCTT CGCCTTCGCC GACGCCCTCC CGGCATGGCC 
GCAAGGTGGT GGGTTTGCGA CGGGGAGGAT CTGCGTGGGG GAGCTGGAGC 
TCGCGGCGGT CACCGCGTTC GAGAAGATCT GCGCCCTGTC GGCGACGAAG 
GGCGGCGGCG GCGGCGTCAC GTTCTACAGG CCGGCCGGCG TGCCGGGGGG 
GTTCTCCGTG CTCGGCCATT ACTGCCAGTC CAACACACGC CCGCTCCACG 
GCCACCTGCT CGTCGCCAAG GCGGTGGCGG GCAAGCCGGA GTCGGAGTCG 
CTGCCGCCTC TCCGGCCGCC GCACGACTAC GAGCTCGTGT GCGCGTTCCG 
CGCCGATGGC GTCGGGGAGG ACAGGAAGTC TTGCCGTGGG TACGGCCGCA 
CCGGCGCCTA CTTCTGGCTT CCCGTGCCGA CGGATGGGTA CCGGGCGCTC 
GGGCTGCTCG TCACGGCTGA GCCCGACAAG CCGCCGCTCA GGGAGGTGGC 
GTGCGCCCGC GCGGACCTCA CCGACGAGTG CGAGCCCCAC GGGTCGCTGC 
TGCAGCTCCA GCTCGTGGGG CAATCGGCGT GCTGGTCGTC GTCGACGGTC 
CCAGCGGCGT TCGCCCTGCG TGGCATCAGG CCGACGCACC GGGGGATGTG 
GGGGCGGGGC ATCGGCGCCG GGACGTTCTG CTGCGGCGCG GTGGGGCTGT 
CGCCGCGGGA GCAGGGCATG GCGTGCCTCA AGAACGTGGA CCTCGACCTG 
TCGGCGATGC CGACGCTGGA GCAGGCGCAC GCGGTGATCC GCCACTACGG 
CCCGACGCTG TACTTCCACC CCAAGGAGGT GTACCTCCCG TCGTCCGTCT 
CCTGGTTCTT CAAGAACGGC GCCGCGCTGT GCAAGAAAGG GGAGGACGCC 
GCCGTGGAGC TCGACGTTGA GGGGTCCCAC CTCCCGTGCG GCGAGTGCAA 
CGACGGCGAG TACTGGATCG GCCTGCCGGA CGGCAAGCGT GGGGAGTCCA 
TCATCTACGG CGACATCGAC AGCGCGGAGC TGTACGCGCA CGTGAAGCCG 
GCGATGGGCG GGACGTGCAC CGACGTCGCC ATGTGGGTGT TCTGCCCGTT 
CAATGGCCCG GCCAGGTTCA AGTTGGGGCC GATCACCATC CCGCTCGGCA 
AGACCGGGCA GCACATCGGC GACTGGGAGC ACTTCACGCT CCGCGTCAGC 
AACTTCACCG GCGAGCTCAT GGCCGTCTAC TTCTCGCAGC ACAGCGGCGG 
GCGGTGGGTG GACGCGTCCG CGCTCGAGTA CACCGCGGGG AACAAGCCGG 
CGGTGTACTC CTCCCGGAAC GGCCACGCCA GCTACCCGTT CCCGGGCGTG 
TACCTGCAGG GGTCGGCGGC GCTCGGGATC GGCATCCGGA ACGACGCGGC 
GCGGAGCGAG CTGGCCGTGG ATTCCAGCGC CAAGTACAGG ATCGTGGCGG 
CGGAGTACCT CGGCGAGGGC GCCGTGGAGG AGCCGCGGTG GCTCAACTTC 
ATGAGGGTGT GGGGGCCGAC GGTGGTGTAC AAGTCGAGGC AGAGGATGGA 
GCGGATGACG AGCGCGATGC ACCGCCGGCT GAGGAGCCCC GCAGAGAGGA 
TGCTGAACAA GCTGCCCAAC GAGCTGTCCA GGGAGGAGGG GCCGACGGGG 
CCCAAGGAGA AGAACAACTG GGAAGGGGAC GAGCGATGGT AGGAGGCTGA 
GGATTTGTCA TTTGTGCTTT GGTGTGTCTG TTTGTTTCGT TTTGGTTCAG 
GTGTTTTACG GTTACTGGAG CAGCTTGTAC TGTGACAGAG ATGTAGTACT 
ACGTGATTAT TATTCATGAT TGAGGGAACA GATTTGCTAT TGTTTGTACT 
TTGTAGGCTA TTATTATACT GTCCACTACT ACTACAGTAC GTGAGAACAA 
GGGACTACCT ACTTGAGTAT TTTGCC

Gene models with high sequence identity

AT5G43950.1 [+] show detail - Plant protein of unknown function (DUF946)
E-value: 4e-162; Score: 568.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	PRE-MRNA PROCESSING-RELATED	1.9e-248
HMMPanther	PRE-MRNA PROCESSING PROTEIN PRP39-RELATED	1.9e-248
HMMPfam	Protein of unknown function DUF946	1.1e-241

See the detailed result >

AT5G43950.1

Model type: Protein coding
Short Description: Plant protein of unknown function (DUF946)
Computational Description: Plant protein of unknown function (DUF946); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF946 (InterPro:IPR009291); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF946) (TAIR:AT1G04090.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR