K18924

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18924

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18924

Determination of introduced cDNA(s)

  • J013027N14 - Rice Full-length cDNAs - Original: J013027N14

    full reading [+] show sequence

    Nucleotide sequence: J013027N14 - full reading
    GGTCGTCCAC GCCTCCGCTC CCCCTTCCTC CTCCTCCTCC CCTCCTCCCC 
    TCGCAAACGC AACCTTCTCT CGCCGAAGAG GGAGAAGGGA AAAGGGGTTT
    CGATTTCTCC GCGATTTCCC CGCGGATTCC TCCCCCCACC GCCTCCGGCT
    CCGGCGACTT GCTCCGCTCC CACGTCGGCG GCGCATCCAA GATTGGTGAT
    CCAAATTTTG AGGTGCGCGA GCGTGTTCGC TATACAAGAG ATCAACTTCT
    CGAACTGCGT GAGATCGTTG ACATACCTGA GGCCATCTTA AGAATTAATC
    AAGAGATTGA TATAGAGCTT CATGGTGAAG ATCAGATTTG GGGTCGCCCT
    GAGTCAGATG TGCAAGTGCA GACACAAACC CAGGCGCAAC CGCACAATCG
    GTATGGTGAG ACAGATAACC GTGACTGGCG TGCACGCACG GTTCAACCTC
    CGGCAGCTAA TGAAGAGAAG TCCTGGGACA ACATTCGTGA AGCTAAAGCA
    GCACATGCTT CAAGTGGTCG GCAACAAGAG CAAGTTAACA GGCAGGATCA
    ATTAAACCAC CAGTTTGCTT CAAAAGCTCA GGTTGGCCCG ACTCCTGCTC
    TTATCAAGGC TGAGGTACCT TGGTCAGCTA GAAGAGGCAA TCTCTCAGAG
    AAAGATAGAG TCCTGAAAAC AGTGAAAGGT ATACTAAACA AACTGACACC
    GGAGAAATTT GATCTACTCA AGGGCCAACT AATGGAATCT GGAATTACCA
    CTGCTGATAT TCTAAAGGAT GTTATTTCTC TCATATTTGA GAAGGCTGTT
    TTTGAGCCCA CCTTCTGTCC GATGTATGCT CAACTTTGTT CCGATCTCAA
    TGAGAAGCTA CCATCATTCC CTTCGGAAGA ACCAGGTGGC AAAGAGATTA
    CATTCAAGCG TGTGCTGTTG AACAATTGTC AGGAAGCATT TGAAGGTGCT
    GAGAGCCTAA GGGCTGAAAT AGCAAAATTG ACTGGCCCTG ACCAAGAGAT
    GGAGAGAAGG GACAAAGAAA GGATTGTCAA ACTAAGAACA CTTGGAAATA
    TCCGTCTAAT TGGTGAGCTA CTTAAGCAAA AGATGGTACC TGAAAAGATA
    GTTCATCACA TTGTTCAGGA ACTCTTGGGG TCTGGACCTG ATAAAAAGGC
    TTGCCCTGAA GAGGAAAACG TTGAGGCTAT TTGTCAGTTC TTCAATACAA
    TTGGTAAACA GCTTGACGAG AACCCAAAAT CTCGTCGAAT TAATGATACC
    TACTTCATTC AGATGAAGGA GTTAACAACA AACCTTCAGT TGGCACCACG
    TCTGAGGTTT ATGGTTCGTG ATGTGGTTGA TCTTCGTTCA AACAATTGGG
    TGCCTCGACG TGAAGAGATT AAGGCCAAGA CAATCAGTGA AATTCATGAT
    GAGGCTATGA AGACACTTGG ACTACGGCCA GGGGCAACAG GACTCACGAG
    GAATGGCCGT AATGCACCAG GTGGTCCTCT TTCCCCTGGT GGATTCCCAA
    TGAATCGACC AGGAACAGGA GGGATGATGC CTGGGATGCC TGGAACACCT
    GGTATGCCTG GATCAAGAAA GATGCCTGGA ATGCCTGGGT TAGATAATGA
    TAACTGGGAA GTTCCACGTT CTAAATCAAT GCCAAGAGGC GACTCTCTTC
    GTAACCAGGG TCCGTTGCTT AATAAGCCAT CATCTATTAA CAAGCCATCA
    TCTATTAACT CCAGGCTTCT TCCTCATGGA AGTGGAGCAC TAATTGGTAA
    GAGTGCTCTT TTGGGCAGTG GTGGTCCACC ATCTCGCCCT TCCAGCCTTA
    TGGCTAGTCT CACTCATACA CCAGCTCAAA CTGCACCATC ACCAAAACCT
    GTAAGTGCAG CTCCAGCTGT TGTGCCTGTC ACAGACAAAG CAGCCGGTTC
    TTCCCATGAG ATGCCAGCTG CAGTTCAGAA GAAGACGGTA TCCCTTCTTG
    AAGAGTATTT TGGCATACGT ATTCTGGATG AAGCACAACA ATGTATCGAG
    GAGCTTCAGT GTCCTGAGTA CTACTCTGAG ATTGTGAAAG AAGCTATCAA
    TCTTGCTTTG GATAAGGGTC CCAACTTCAT TGATCCTCTT GTTAGGCTGC
    TGGAGCATCT GCACGCCAAG AAAATTTTCA AGACTGAGGA CCTGAAAACT
    GGATGCTTAC TGTATGCAGC CCTGCTGGAA GATATTGGTA TTGACCTTCC
    TCTAGCTCCA GCCTTGTTTG GTGAAGTTGT TGCACGACTG AGTTTGTCGT
    GTGGCTTGAG CTTTGAAGTT GTTGAGGAGA TTCTAAAAGC AGTGGAGGAT
    ACATACTTCC GCAAAGGAAT TTTTGATGCT GTCATGAAAA CCATGGGCGG
    AAACTCTTCA GGTCAGGCTA TATTGAGCTC GCATGCTGTG GTAATCGACG
    CCTGCAACAA ACTTTTGAAA TAATAGCCCC TTGGCAGCCT TGGCATATCA
    ACCTTTTGGA TGCTGTGCCT AGCCAAAACA GCATCGTGTA TTCTCTATAG
    CTTAGGTGTT TCACCCCAGA GGAACTCTCG TACTGGAGAT GTGAGCAACA
    GCCAGTTTTG TGCTGTATAT TTTTGCAAGG TCAGATGAGT GTTCATTATT
    GTTTCGACAA CGAAGGAAAG AAAGAAGCCA TGGATTTTGC TATCGGGTGA
    CAGCTTAATT CGCTGGAGCC TGAGATGAAC AAGGCTTAAT GTGGTATTTT
    TGTGTCCCTT TATTAGTTCT TTTCTGTGCG TACACATTTT GTAACAATGT
    ACTATGGTTT TGGAGTATTC TGTTGGTTTA CAATATATCG TGTCATTGTA
    GCGGTCAAAT TTTGATACCT AATTCTGAGG TTTGCTTGAG CATTCGTGCC
    TCGTGTGCGA TGAAGTTTTA TCATTTTCCT CAGAATTACT TGCTGATGCA
    TTTGACT

    Gene models with high sequence identity

    1. AT5G57870.2 [+] show detail - MIF4G domain-containing protein / MA3 domain-containing protein
      E-value: 0; Score: 755.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Initiation factor eIF-4 gamma, MA3 19.796
    HMMPfam MIF4G-like, type 3 1.3e-58
    HMMPfam Initiation factor eIF-4 gamma, MA3 2.2e-20
    HMMPanther EUKARYOTIC INITIATION FACTOR 4F-RELATED 0
    HMMPanther EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GA 0
    Gene3D MIF4-like, type 1/2/3 8.5e-73
    superfamily Armadillo-type fold 8.2e-71
    HMMSmart MIF4G-like, type 3 4.9e-55
    HMMSmart Initiation factor eIF-4 gamma, MA3 1.5e-26

    See the detailed result >

    AT5G57870.2

    Model type
    Protein coding
    Short Description
    MIF4G domain-containing protein / MA3 domain-containing protein
    Curator Summary
    Encodes a putative eukaryotic translation initiation factor.
    Computational Description
    eukaryotic translation Initiation Factor isoform 4G1 (eIFiso4G1); FUNCTIONS IN: RNA binding, binding, translation initiation factor activity; INVOLVED IN: translational initiation, translation, RNA metabolic process; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891), Armadillo-type fold (InterPro:IPR016024), MIF4G-like, type 3 (InterPro:IPR003890), MIF4-like, type 1/2/3 (InterPro:IPR016021); BEST Arabidopsis thaliana protein match is: MIF4G domain-containing protein / MA3 domain-containing protein (TAIR:AT2G24050.1); Has 2168 Blast hits to 1785 proteins in 242 species: Archae - 0; Bacteria - 22; Metazoa - 1155; Fungi - 192; Plants - 508; Viruses - 0; Other Eukaryotes - 291 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR