K18927

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18927

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18927

Determination of introduced cDNA(s)

J033090N01 - Rice Full-length cDNAs - Original: J033090N01

full reading [+] show sequence

GTGAAAAGAG AGAGCAGCAG CGAGAGACGA ACAAAAAACA GAATCCATCG 
CCATAATCGA AGGTTCGCTC TTGCTTCCAC CCCGCAATCC ACATGGAGAA 
CGAATTCCAG GATGGTAAGA CGGAGGTGAT AGAAGCATGG TACATGGATG 
ATAGCGAAGA GGACCAGAGG CTTCCTCATC ACCGCGAACC CAAAGAATTC 
ATTCATGTTG ATAAGCTTAC AGAACTAGGA GTAATCAGCT GGCGCCTAAA 
TCCTGATAAC TGGGAGAATT GCGAGAACCT GAAGAGAATC CGCGAAGCCA 
GAGGTTACTC TTATGTGGAC ATTTGTGATG TGTGCCCAGA GAAGCTGCCA 
AATTATGAAA CTAAGATCAA GAGTTTCTTT GAAGAACACC TGCATACCGA 
TGAAGAAATA CGCTATTGTC TTGAAGGGAG TGGATACTTT GATGTGAGAG 
ACCAAAATGA TCAGTGGATT CGTATAGCAC TGAAGAAAGG AGGCATGATT 
GTTCTGCCTG CAGGGATGTA CCACCGCTTT ACGTTGGACA CCGACAACTA 
TATCAAGGCA ATGCGACTGT TTGTTGGCGA TCCTGTTTGG ACACCCTACA 
ACCGTCCCCA TGACCATCTT CCTGCAAGAA AGGAGTTTTT GGCTAAACTT 
CTCAAGTCAG AAGGTGAAAA TCAAGCAGTT GAAGGCTTCT GAGGGTTTTG 
TTGGGCTCCT GCACTGCGGT TCTATATTCA ACCTGAATAA GATGTGCTAT 
AGCAATGTAA ATTTAGCACA GTGGCTATGG TCGCCACTCA CCAACTTGAT 
GTGAAAGATT TAATGATTTT TGTTAATTCT TATGTATCAA TCGGCATATA 
GCATTTCCGA AATGTGTTTT CAATAAACAG AAAGTAAGAG TCATGAAGCT 
G

Gene models with high sequence identity

AT4G14710.2 [+] show detail - RmlC-like cupins superfamily protein
E-value: 3e-89; Score: 325.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Cupin, RmlC-type	2e-42
HMMPfam	Acireductone dioxygenase, ARD	7.9e-68
Gene3D	RmlC-like jelly roll fold	6.8e-72
HMMPanther	Acireductone dioxygenase, ARD	6.6e-89

See the detailed result >

AT4G14710.2

Model type: Protein coding
Short Description: RmlC-like cupins superfamily protein
Computational Description: ATARD2; FUNCTIONS IN: acireductone dioxygenase [iron(II)-requiring] activity, metal ion binding; INVOLVED IN: oxidation reduction, L-methionine salvage from methylthioadenosine; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Acireductone dioxygenase, ARD (InterPro:IPR004313), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: acireductone dioxygenase 1 (TAIR:AT4G14716.1); Has 1544 Blast hits to 1537 proteins in 521 species: Archae - 0; Bacteria - 702; Metazoa - 158; Fungi - 135; Plants - 464; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link: InterPro Scan - TAIR