K18936

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18936

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)
petal (PO:0009032)
  • abnormal (PATO:0000460)
    (Flower::Shape::petal)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18936

Determination of introduced cDNA(s)

  • J013035E10 - Rice Full-length cDNAs - Original: J013035E10

    full reading [+] show sequence

    Nucleotide sequence: J013035E10 - full reading 
    TTGGTATCAA GGATAAGCAG CCGAGGAAAA GGTATTTGAC GGAAGCCTGC 
    GATGTCTGCG GCGCCGGCTG CGAGCGGCTG GTTGCGGCCG TCCGCGACCG 
    CGCGGCTCTG CGAGGCGGGG TTCTTCACCG ATTACGCCAA CCCCGCCACT 
    ACGCGGATCT GCATCGGCCG GAGGCGGAGC GGTGCGCCGA GAAACATGGC 
    TTCAAGTTGC ATCATCCAAT TTGGGCCGAT GCAAAATTGC TCATGTTAAA 
    AGTGGAGATG CTGATGGTTA CCCAACGACT GAAGATTTGT CAATTGACGA 
    GGAAACCCTG CAGCGTAATT TACAGACAGC CATCCAGGAA GAAGATTATT 
    CCCGGGCTGC AAAGATAAGG GATGATCTGC GCATCCTCCA TGAAGATACC 
    AAAGCTTCCC TCCTTGCAGC AAACACACGG TTTTACAATG CTTTCAAGAA 
    TGGCGATCTT GCAGCGATGT ACTCTTTATG GGCTAAGGGT GACCATGTAT 
    ATGTTATCCA TCCTGCTGCG GGTCGGATAT CAGGTTATGA CGTGGTCATG 
    CAAAGCTGGG AGATGGTATG TGGCGCAGAT TATGAGTTCC CACTAAACAT 
    TGATCTGAAA AATGTAGAGG TTCATGTGCA TGGTGACCTT GGTTACGTCA 
    CATGCTTGGA AGTGGTTAAG ACCAAAGGAA GAACATGGGG GAAGCAAGTC 
    GCCACAAACG TCTTCGAGAA GGTTGATGGC ACATGGCGCA TGTGTGTTCA 
    CCATGCATCA CACATAGAGG AATGAAAACC TTAGTTGATT TGGCATGGAA 
    ATTTTGCAGA AAAGCTAGAC AGGCAATACA TGATTTCGAG ATTTCTATCT 
    TAGCAGCTGC ATCATTAGTC TATGTTTTCT CGAGTCAATT GTATCGATGC 
    TTAAGTTTTC AAACTGAATT TTTTGTGGTT TCGTTTGAGA TTCCATAGTG 
    GTTGGCATAT TATGTCACTT GAGATTATAT ATGACTAGCT ATTTTTCCAT 
    TTCTTTTTGG CGGCTAACTG GGAATGGACT TGATCTGCAA GTAACTCGTA 
    CCAGGCTACT TCACCG

    Gene models with high sequence identity

    1. AT3G09250.1 [+] show detail - Nuclear transport factor 2 (NTF2) family protein
      E-value: 4e-54; Score: 208.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Calcium/calmodulin-dependent protein kinase II, association-domain 1.8e-06
    HMMPfam UvrB/UvrC protein 2.2e-06
    superfamily NTF2-like 3.1e-24

    See the detailed result >

    AT3G09250.1

    Model type
    Protein coding
    Short Description
    Nuclear transport factor 2 (NTF2) family protein
    Computational Description
    Nuclear transport factor 2 (NTF2) family protein; FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: nucleotide-excision repair; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UvrB/UvrC protein (InterPro:IPR001943); BEST Arabidopsis thaliana protein match is: Nuclear transport factor 2 (NTF2) family protein (TAIR:AT4G10925.3); Has 282 Blast hits to 282 proteins in 97 species: Archae - 0; Bacteria - 155; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR