K19015

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19015

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19015

Determination of introduced cDNA(s)

  • J023008O22 - Rice Full-length cDNAs - Original: J023008O22

    full reading [+] show sequence

    Nucleotide sequence: J023008O22 - full reading
    GACTCTTCCT CCTCCTCCCT CCTCGCCGGA GCTTGGCTGA GCTTGAGCTG 
    AGCTGAGCTG ATCGGCGGCG GCAATGGCGG GCGGCGCGAT GGTCCAGACG
    GTGGGTGGCA AGACGTACCC GGGGAAGATG ACCGCGTTCG TGTTCTTCAC
    CTGCCTCGTC GCCTCCTCCG GCGGCCTCAT CTTCGGCTAC GACATCGGCA
    TCTCCGGCGG CGTCACCTCC ATGGACTCCC TCCTCAGCGA GTTCTTCCCG
    TCGGTGTACG CGCAGGCGAA GGCGAGCAAG GACACCAACC AGTACTGCAA
    GTTCGACAGC CAGCTGCTGA CGCTCTTCAC CTCGTCGCTG TACCTGGCGG
    CGCTGGCGAC GTCGTTCGTG GCGGCGTGGG TCACCCGGGT GTTCGGCCGG
    AAGTGGTCCA TGTTCTGCGG CGGCGTCACC TTCCTCGCCG GCTCGGCGCT
    CAACGGCGCC GCCACCGACG TCATGATGCT CATCCTCGGC CGCATCCTCC
    TCGGCATCGG CGTCGGCTTC GCCAACCAGT CCGTGCCGCT CTACCTGTCG
    GAGATGGCGC CGGCGAACCT CCGCGGGATG CTCAACATCG GCTTCCAGCT
    CATGACCACC ATCGGCATCC TCTCCGCCAA CCTCATCAAC TACGCGACGT
    CGAGCATCGA GGGCGGGTGG GGGTGGCGCA TCGGCCTCGG CCTCGCCGGC
    GTGCCCGCGC TCATCATCAC GCTCGGCGCG CTCGTCCTCC CGGACACCCC
    AAACTCCCTC ATCGCCCGCG GCTACGCCGG CGACGCCAAG CGCGTCCTCG
    TCAAGATCCG CGGCACGGAC GACGTCCACG ACGAGTACGA CGACATGGTA
    GCGGCAAGCG AAGAAGCCGC CTCGATCGAG CACCCATGGC GGAACATCCT
    CCATCGCAAG TACCGCCCGC AGCTCACCAT CGCCATCCTC ATCCCGTGCT
    TCCAACAGCT CACCGGCATC AACGTGATCA TGTTCTACGC GCCGGTGCTC
    TTCCTCACCA TCGGCTTCGC CGGCGACGCG TCGCTCATGT CCGCCGTGAT
    CACGGGCCTC GTCAACATGT TCGCCACCGT CGTCTCGATC ATCTCCGTGG
    ACCGCCTCGG CCGCCGCGTG CTGTTCCTCC AGGGCGGCAC GCAGATGTTC
    ATCTCCCAGG TGGTGGTCGG GACGCTGATC GCGCTCCAGT TCGGCGTCGC
    GGGCGTCGGC GAGATGTCGC GGTCGTACGC CATCTTGCTC GTGCTGTTCA
    TCTGCATGTA CGTGGCCGGG TTCGCGTGGT CGTGGGGGCC CCTGGGGTGG
    CTGGTGCCGA GCGAGGTGTT CGCGCTGGAG ATCAGGTCGG CGGGGCAGAG
    CATCGCGGTG TGCGTCAACA TGATGCTGAC GTTCGTCATC GGGCAGGCGT
    TCCTCACCAT GCTGTGCCAC CTCAAGTTCG GCCTCTTCTA CTTCTTCGCC
    GGGTGGATGC TGGTCATGAC CACCTTCGTC GCGCTCTTCC TGCCGGAGAC
    GAAGGGGGTG CCCATCGAGG AGATGAACCA CGTCTGGAGC CGGCACTGGT
    TCTGGGGCAG CTACGTCACC GCCCACGACG TCGCCGGCGC CGGCGCCGGA
    GGAGGAGGAA ACCGCAGAAG CCACAACGTC TAGCTCTTAC ATATACTATT
    ACCGTTTACG AGTTACGCGA GAGAGAGAGA ATTAATGGGT AGGTTGTGTA
    ATTAGGTAAT GCAAGAATTA ATTAAACCAA TTAATTTCAA GGG

    Gene models with high sequence identity

    1. AT1G11260.1 [+] show detail - sugar transporter 1
      E-value: 0; Score: 643.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Sugar transporter, conserved site 0
    PatternScan Sugar transporter, conserved site 0
    superfamily Major facilitator superfamily, general substrate transporter 3.1e-55
    FPrintScan Sugar/inositol transporter 1.8e-31
    FPrintScan Sugar/inositol transporter 1.8e-31
    FPrintScan Sugar/inositol transporter 1.8e-31
    FPrintScan Sugar/inositol transporter 1.8e-31
    FPrintScan Sugar/inositol transporter 1.8e-31
    HMMPanther MONOSACCHARIDE TRANSPORTER, PLANT 4.9e-222
    HMMPanther SUGAR TRANSPORTER 4.9e-222
    ProfileScan MFS 44.407
    HMMTigr Sugar/inositol transporter 3e-108
    HMMPfam General substrate transporter 1.8e-125

    See the detailed result >

    AT1G11260.1

    Model type
    Protein coding
    Short Description
    sugar transporter 1
    Curator Summary
    Encodes a H+/hexose cotransporter.
    Computational Description
    sugar transporter 1 (STP1); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: nucleus, plasma membrane, vacuole, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter protein 12 (TAIR:AT4G21480.1); Has 29569 Blast hits to 28978 proteins in 2050 species: Archae - 503; Bacteria - 13950; Metazoa - 4366; Fungi - 6940; Plants - 2466; Viruses - 2; Other Eukaryotes - 1342 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR