K19016

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19016

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
flower (PO:0009046)
  • abnormal (PATO:0000460)
    (Flower::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
flower (PO:0009046)
  • abnormal (PATO:0000460)
    (Flower::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19016

Determination of introduced cDNA(s)

  • J013001F12 - Rice Full-length cDNAs - Original: J013001F12

    full reading [+] show sequence

    Nucleotide sequence: J013001F12 - full reading 
    GACAACTTGT AGGCAGCTTC TCTCTGCATA CAAGAGGAGG TCTCTCCTTC 
    TTCAGCGACT CCCTCAAGAT CTTGCCCAAA CTTGCTGAGA TCTGTAAGAG 
    CAGTAGGCGA AGATGGTGAA GATCTGCTGC ATCGGAGCTG GGTACGTGGG 
    CGGGCCGACC ATGGCGGTGA TCGCCCTCAA GTGCCCGGCG ATCGAGGTGG 
    TGGTCGTCGA CATCTCCAAG CCGCGCATCG ACGCCTGGAA CAGCGAGCAG 
    CTGCCGATCT ACGAGCCGGG GCTCGACGAG GTGGTCAAGG AGTGCAGGGG 
    CAGGAACCTC TTCTTCAGCA CGGACGTCGA GAAGCACGTC GCGGAGGCGG 
    ACATCATCTT CGTGTCCGTG AACACGCCGA CCAAGACGCG CGGCCTCGGC 
    GCCGGCAAGG CGGCCGACCT CACCTACTGG GAGAGCGCGG CGAGGATGAT 
    CTCCGACGTG TCCAAGTCCG ACAAGATCGT CGTCGAGAAG TCCACCGTGC 
    CGGTCAAGAC GGCCGAGGCG ATCGAGAAGA TCCTGACGCA CAACAGCAAG 
    GGCATCAACT ACCAGATCCT CTCCAACCCG GAGTTCCTCG CCGAGGGCAC 
    CGCTATTGAC GACCTGTTCA AGCCCGACCG CGTCCTCATC GGCGGCCGCG 
    AGACGGCGGA GGGGAGGAAG GCCGTGCAGG CGCTCAAGTC GGTGTACGCG 
    CACTGGGTGC CCGAGGACAG GATCATCACC ACCAACCTCT GGTCCGCCGA 
    GCTCTCCAAG CTCGCCGCGA ACGCGTTCCT GGCGCAGAGG ATCTCGTCGG 
    TGAACGCCAT CTCGGCGCTC TGCGAGGCCA CCGGCGCGAA CGTCACCGAG 
    GTGGCGTACG CCGTCGGCAA GGACTCGAGG ATTGGCCCCA AATTCCTCAA 
    CGCCAGCGTT GGATTCGGCG GCTCCTGCTT CCAGAAGGAC ATCCTGAATC 
    TGGTGTACAT CTGCGAATGC AATGGCCTCC CCGAGGTTGC GAACTACTGG 
    AAGCAGGTGA TCAAGATCAA CGACTACCAG AAGAGCCGGT TCGTGAACCG 
    GGTGGTGTCG TCCATGTTCA ACACGGTGTC GGGCAAGAAG ATCGCCGTGC 
    TGGGGTTCGC GTTCAAGAAG GACACCGGCG ACACGAGGGA GACGCCGGCG 
    ATCGACGTGT GCCACGGCCT GCTCGGCGAC AAGGCGCAGA TCAGCATCTA 
    CGACCCGCAG GTGACGGAGG ACCAGATCCA GCGGGACCTC GCCATGGGCA 
    AGTTCGACTG GGACCACCCG ATGCACCTGC AGCCGACGAG CCCCACGGCG 
    TTCAAGCAGG TGAGCGTGGT GTGGGACGCG TACGAGGCCA CCAAGAACGC 
    CCATGGCCTC TGCATCCTCA CCGAGTGGGA CGAGTTCAAG ACGCTCGACT 
    ACCAGAAGAT CTACGACAAC ATGCAGAAGC CGGCGTTCGT CTTCGACGGC 
    CGCAACGTCG TCGACCCGGA GAAGCTCAGG GAGATCGGCT TCATCGTCTA 
    CTCCATCGGC AAGCCGCTCG ACGCCTGGCT CAAGGACATG CCCGCCGTGG 
    CATGATAAGA TTCATGTGAA TTTTAATCGA TCGATTCGAT TCTCAACCTC 
    GATTCGAGCT GCAGGAATTC GACTTGGAAG AAGAGCAATG CAAGATGGGT 
    TGGCCACTTA AAATTCTTTA TAGTTCGTTT TTTTTTTTTT TGCAGGAGAC 
    GACACTACCA TTTTCTCAGG CATAAAAAAG TTGGGTGTTC TTGTTAGTAA 
    AATCATCGTC ATCGCTGTTG AAGTTTTTTT TTTCATCGTT TGCACTGTTC 
    TAGATCACTA TAATCCCCAC CCCACTCCCC CTCCCCCTCC CCCTCCCCCT 
    GTCATCATGG CTCTTTCTGT TTGAGGGCCA TCTGAACGAA AATTTACCTG 
    TATTATTCAG TCAACTTGTT ATAGCAGATT GGTTATTCCA TTGTAC

    Gene models with high sequence identity

    1. AT5G15490.1 [+] show detail - UDP-glucose 6-dehydrogenase family protein
      E-value: 0; Score: 873.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D NAD(P)-binding domain 1.3e-56
    Gene3D Dehydrogenase, multihelical 1.3e-26
    superfamily NAD(P)-binding domain 2.1e-47
    superfamily UDP-glucose/GDP-mannose dehydrogenase, C-terminal 3.2e-36
    superfamily 6-phosphogluconate dehydrogenase, C-terminal-like 6.2e-32
    HMMTigr Nucleotide sugar dehydrogenase 7.6e-107
    HMMPanther UDP-GLUCOSE 6-DEHYDROGENASE 5.5e-179
    HMMPanther UDP-glucose/GDP-mannose dehydrogenase, dimerisation and substrate-binding domain 5.5e-179
    HMMPfam UDP-glucose/GDP-mannose dehydrogenase, N-terminal 7.4e-65
    HMMPfam UDP-glucose/GDP-mannose dehydrogenase, C-terminal 1.1e-37
    HMMPfam UDP-glucose/GDP-mannose dehydrogenase, dimerisation 1.4e-33

    See the detailed result >

    AT5G15490.1

    Model type
    Protein coding
    Short Description
    UDP-glucose 6-dehydrogenase family protein
    Computational Description
    UDP-glucose 6-dehydrogenase family protein; FUNCTIONS IN: in 7 functions; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cytosol, cell wall, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucose/GDP-mannose dehydrogenase, N-terminal (InterPro:IPR001732), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), UDP-glucose/GDP-mannose dehydrogenase, dimerisation and substrate-binding domain (InterPro:IPR014028), UDP-glucose/GDP-mannose dehydrogenase, C-terminal (InterPro:IPR014027), NAD(P)-binding domain (InterPro:IPR016040), UDP-glucose/GDP-mannose dehydrogenase, dimerisation (InterPro:IPR014026), Nucleotide sugar dehydrogenase (InterPro:IPR017476); BEST Arabidopsis thaliana protein match is: UDP-glucose 6-dehydrogenase family protein (TAIR:AT3G29360.2); Has 13373 Blast hits to 13344 proteins in 2170 species: Archae - 309; Bacteria - 7111; Metazoa - 214; Fungi - 99; Plants - 213; Viruses - 14; Other Eukaryotes - 5413 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR