K19019

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19019

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19019

Determination of introduced cDNA(s)

  • J033053O06 - Rice Full-length cDNAs - Original: J033053O06

    full reading [+] show sequence

    Nucleotide sequence: J033053O06 - full reading 
    GATCTAGAAG CGTCGCCGCC GACTCGCCAT CTCCTCTCTA GGTCACCGGA 
    TTTCCTAGCC GGCGGCGAGC TCGTCGGCTC AGGCGGCGGC GGCGGCGGCG 
    ATGGACTGGA GCTCCGTGAC TGCGGAGGAT CTGGTGGACG CGCTGCGGGA 
    GGTGGACTGG TCGACGCCGC CGCGCCCCGT CTCCGAGTTC TTCTCCCGCT 
    TCACCGCCCC GCGATCCTAC TCCAAGTGGA CCAGCCGCCT CAAGTGCAAC 
    CTCTACTACT ACAGGACGAA CTACTTCATC TTGATCATGT TCATTCTTGG 
    GATGGGCTTT CTCCGGAAAC CAGTTTCCAT CCTTGCAGCT TTTTCAACAG 
    GCCTCAGCAT TGCATTTCTC AATGACAGTT TTGCAGTTAC ATTCAATGAG 
    AAAGTCACAA GGACAGTCAG ACAATTTTCA CCACATTTAG CAGCAAAGAT 
    GAGGCCACCC TTAAGACCTG TCATTCGTGG CCGACCAAGC TCAAAAAGAT 
    CAATTCATAT TTGTGGCCGG CCTCGATGGG TTTTTGTTGT ATTATTTTCT 
    GTCGTAAGCT GCTTCCTCTG GATGACCTCA TGTAGTCTCC TTACGGTTCT 
    GTGGGCACTA ATTGTTGGTC TGCTTGCAAC CTTGCTTCAC GCCAGTTTCA 
    GAACACCTAA TCTGAAAGCA CGCCTGAACA CATTCAGGGA GGAATTTCGA 
    GCAGTATGGC GGAATTATAG CGAGTTTTAA ACGCCCTTTT TGTCTACCCC 
    ATGTGAGTGC CTTCATCGCT GTCTTATGGT CGAAAATTGA ATCTAGCGAA 
    GGGCTTAAAG TGCTACCTGT TCTGTCAGTG CATCATTGTG GAGCTGCTTA 
    TTGGATGTCT CTGCGGTGGT GCAATGTAGA AGGACCTACT TCAGTGTGCT 
    TTCGAATTTC TTGATTTTCT CTGCAGATTT ATGTGGTAAA AATGTTACCA 
    AGTTCCATAT CTCTGCTGCC TCTTGCGACT CTTTAATTGT GGGAGATTAA 
    AAATAGGCAT GCTATTTTCT CCAGTTTATG GATTTGGCTT TAGATTGTGG 
    ATTATTCTAG TCCCCCACCA CATGGATCTC CATAGTTTTA GCTTCTGGTC 
    CAAAACTTCT ACTGTATTTT GATACATTGG GGAAGGAACA GCATGTAAAA 
    GAGACAGCTA TCCTGAAGAG AAGAAAAAAG ATATTGTTGT G

    Gene models with high sequence identity

    1. AT5G02040.2 [+] show detail - prenylated RAB acceptor 1.A1
      E-value: 7e-78; Score: 288.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PRA1 PROTEIN 4.5e-05
    HMMPfam Prenylated rab acceptor PRA1 2.3e-42

    See the detailed result >

    AT5G02040.2

    Model type
    Protein coding
    Short Description
    prenylated RAB acceptor 1.A1
    Computational Description
    prenylated RAB acceptor 1.A1 (PRA1.A1); CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT3G11402.2); Has 236 Blast hits to 236 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 113; Fungi - 12; Plants - 110; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR