K19021

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19021

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
rosette leaf (PO:0000014)
  • increased length (PATO:0000573)
    (Rosette leaf::Shape::long)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Original: K19021

Determination of introduced cDNA(s)

  • J023139M11 - Rice Full-length cDNAs - Original: J023139M11

    full reading [+] show sequence

    Nucleotide sequence: J023139M11 - full reading 
    GGTGGTTGGC AAATCAATCG AATCGATCCC CTCTCATCCG CTCGCGGACA 
    CAGAATCTCT CCTCTCCCTC TCGGCGCCCA GGTTCTCGCC GCCGCCCGCC 
    CCTTCCTTCT CTTCTCCTCC TACGTACGTA AATAATCCAC CTACGATAGA 
    TACGACCAAC CCCATTATGA GCTCTCTATG CCCCTTTGCC AAACTCGCCT 
    CCGCTGGCGC CACATGCCCC GTAAAATCAT CATCAGACAA CAAAACCACC 
    ATCAATCACA CCGACGACGA CGACGACGAC AATGAAAAAA CTGGCAATGC 
    TAACACCGAT CCTCGTGTGG TGCCACCAAA GTGCCCCTTT GGCTATGACT 
    CCAACACCTT CAAGCTTGGC CCACTCAGCT GCATGGTCTG CCACGCTCTG 
    CTACATCAAA GCAGCAAATG CACCCCGTGC TCCCACAAGT TCTGCAAGGC 
    ATGCATATTG CGCTTTAAGG ACTGTCCATT GTGTGGTGCT GACATCCAAG 
    GGATCGAGCC CGATGATGAG CTTCAAGGCC TTGTCGACCG CTTCATTGAT 
    GGCCATGCCC GAATCAAGAG ATCACATGCT GCAGGCGATG GGGAAGCCGC 
    AAGTGACAAC AAGACCAAGG TCATTTACGA GGATGTCTCC ATGGAGAGAG 
    GGGCTTTTCT GGTCCAGCAA GCGATGAGGG CCTTTCGCGC ACAGAACATT 
    GAAAGTGCAA AGTCAAGGCT CAGTATGTGT GCACAAGACA TCAGGGAAGA 
    ATTGAAATCT AAACAAGACA ACCAAGAACT GTGTTCTCAA CTTGGAGCTG 
    TGTTAGGAAT GCTTGGGGAC TGCTGTCGGA CCTTGGGAGA TGCTCCTTCA 
    GCAATCACTT ACTATGAAGA AAGTGCTGAA TTCCTCTCGA AATTGCCCAA 
    AAAAGATCTG GAGTTGGTCC ATACTCTCTC AGTTTCACTA AATAAAATTG 
    GAGATCTTCG CTATTATGAT GGGGACCTCC ACTCAGCAAG AAGCTATTAT 
    GCGCGTTCGT TGGATGTTCT CAGAAGTGCA GCAAAAGAAC ACTCAGCTGT 
    GGCTTCCCAG GTCATTGATG TAGCAACTTC TCTTGCCAAA GTTGCGGATG 
    TCGATAGAAA TCTTGGGAAC GAAAGCATGG CAGTTGAGGG TTTTGAGGAA 
    GCAATTAAAT GCCTTGAGAA TTTGAAGCTG GAATCTGGAG AGGCCAGTCT 
    TGAGCAGCGG CGTCTCTCGG TTCTCGACTT TCTACAAAAA CAATTGGATG 
    ACAAGTGATA TGCACGGTTC TAATTTGAAG AGCACACTCA CAGGATATAT 
    GCACTATCCA TAATGAGGAT CAGCTCCAGT ACGTAGTCTC TGTGATGCAT 
    ATGGAAGGGA GTTGCTCCAG ATCGAATGAA TGGTAACTGG TGTGTATTTG 
    AGGTTTGCTG CGACACAGAA TAAATACTTT CGAGTTGTAT ATGTTTCTTG 
    TGTCTGCCAC GGGTGGAGAC CTCTTTGAGT CCCTGAGGCA CCACGGAGAC 
    GAAACTTCTC GGAAGTACTG ATTCCTTGTT GCCTCTGCCG TGTTATGTGA 
    ATGTTATCCC ACTGTATATT TATTGATGAT ATAATATAAG AAAAGAACAG 
    CACAGATGTT TTGTATCGCC CTATCAAATT TAAGTTGTTT TGCG

    Gene models with high sequence identity

    1. AT3G54360.1 [+] show detail - zinc ion binding
      E-value: 5e-120; Score: 428.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, RING-type 11.501
    HMMSmart Zinc finger, RING-type 0.0014
    superfamily TPR-like 7.2e-10
    superfamily RING/U-box 3.8e-09
    PatternScan Zinc finger, RING-type, conserved site 0
    Gene3D no description 8.1e-05
    HMMPanther SUBFAMILY NOT NAMED 2.2e-05
    HMMPanther FAMILY NOT NAMED 2.2e-05

    See the detailed result >

    AT3G54360.1

    Model type
    Protein coding
    Short Description
    zinc ion binding
    Computational Description
    zinc ion binding; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); Has 748 Blast hits to 691 proteins in 131 species: Archae - 16; Bacteria - 104; Metazoa - 470; Fungi - 16; Plants - 58; Viruses - 8; Other Eukaryotes - 76 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

  • J023034B10 - Rice Full-length cDNAs - Original: J023034B10

    full reading [+] show sequence

    Nucleotide sequence: J023034B10 - full reading 
    GTCGTCGATC TCACGCTACC CTCGATCGAG CTCTCTCTGC GGCAAACCCC 
    TCCCTCCTTC CCACCCAAGG GGGAAAGCTC CGCCGCCATC GTCGTGCTGC 
    TCCCCGTTCC CGCGGATCCA TCCGGGGCTC TGGGTTGATC TACCTCGCCG 
    TGACAAACAG TGAGTCGGCA TAAATTTTGG TACAGTTGAG AAGTTCTTGT 
    GTTGGACATA TCCCTCCTCC CCTAGAAATA AGAAGCTGCT TAAGTTCACT 
    ATGTCTGGAA TGCCATCTGA TGAGGCAACT GGTCAAGTGA GGCTCGAAGG 
    AGATGTTTCT GACAAAAAGG AAGAAAAAAC TCAAGAGCAG AGCGAAGCAA 
    GTGGAATGCC CTCACCACAA GAAGAGGAAG CAGCCATCAA GAAAAAATAT 
    GGTGGAATAC TGCCCAAGAG GACGCCACAT ATAACTAAGG ATCATGATCG 
    GGCTTACTTT GATTCTGCTG ATTGGGCTCT AGGCAAGCAA GGTGGAAGCC 
    ACAAACCTAA AGGGCCTCTT GAAGCACTTC GACCAAAACT TCAGCCTACT 
    CAACAACATG CACGTGCTCG GCGGACTCCC TATGCATCTG CTGACAATGA 
    TGAGTGTATG AATTTGCCTC CTGAGGATTT GATCCAGAAT GGTGATCCCA 
    TCGAAGACAA GAACAAGGAA GAACAGTAAC GAGTAGCTGC ACCCTGTCTA 
    TTTGGAGCGT TGCCAATCCT GTCCTCGAGC CAAACTGTTG CCTTGGTAAA 
    TAACTAGAGC CAATGCCTAC ACTTGTGGGG TTGAGCTCTG CAGTGTTTAA 
    CTTAAACGTA AGACGTGGTA TGTCTGGCGT CTACCACATT CAGCTGTTCA 
    GTGTCTTTCT GGCATCTGTA ACAGCTAGGA ATGAAAACTT ACATATGATG 
    CTGTGATACC GATGCTGTAG TACCTGATGT GCAAAGAAAC AAATAATGCT 
    TCAAATTCAG CTCCCCATGA ATGGAAATTA GCC

    Gene models with high sequence identity

    1. AT5G64130.1 [+] show detail - cAMP-regulated phosphoprotein 19-related protein
      E-value: 1e-29; Score: 127.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G64130.1

    Model type
    Protein coding
    Short Description
    cAMP-regulated phosphoprotein 19-related protein
    Computational Description
    cAMP-regulated phosphoprotein 19-related protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: cAMP-regulated phosphoprotein/endosulphine conserved region (InterPro:IPR006760); BEST Arabidopsis thaliana protein match is: cAMP-regulated phosphoprotein 19-related protein (TAIR:AT1G69510.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR