K19021

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19021

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
rosette leaf (PO:0000014)
  • increased length (PATO:0000573)
    (Rosette leaf::Shape::long)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Original: K19021

Determination of introduced cDNA(s)

  • J023139M11 - Rice Full-length cDNAs - Original: J023139M11

    full reading [+] show sequence

    Nucleotide sequence: J023139M11 - full reading
    GGTGGTTGGC AAATCAATCG AATCGATCCC CTCTCATCCG CTCGCGGACA 
    CAGAATCTCT CCTCTCCCTC TCGGCGCCCA GGTTCTCGCC GCCGCCCGCC
    CCTTCCTTCT CTTCTCCTCC TACGTACGTA AATAATCCAC CTACGATAGA
    TACGACCAAC CCCATTATGA GCTCTCTATG CCCCTTTGCC AAACTCGCCT
    CCGCTGGCGC CACATGCCCC GTAAAATCAT CATCAGACAA CAAAACCACC
    ATCAATCACA CCGACGACGA CGACGACGAC AATGAAAAAA CTGGCAATGC
    TAACACCGAT CCTCGTGTGG TGCCACCAAA GTGCCCCTTT GGCTATGACT
    CCAACACCTT CAAGCTTGGC CCACTCAGCT GCATGGTCTG CCACGCTCTG
    CTACATCAAA GCAGCAAATG CACCCCGTGC TCCCACAAGT TCTGCAAGGC
    ATGCATATTG CGCTTTAAGG ACTGTCCATT GTGTGGTGCT GACATCCAAG
    GGATCGAGCC CGATGATGAG CTTCAAGGCC TTGTCGACCG CTTCATTGAT
    GGCCATGCCC GAATCAAGAG ATCACATGCT GCAGGCGATG GGGAAGCCGC
    AAGTGACAAC AAGACCAAGG TCATTTACGA GGATGTCTCC ATGGAGAGAG
    GGGCTTTTCT GGTCCAGCAA GCGATGAGGG CCTTTCGCGC ACAGAACATT
    GAAAGTGCAA AGTCAAGGCT CAGTATGTGT GCACAAGACA TCAGGGAAGA
    ATTGAAATCT AAACAAGACA ACCAAGAACT GTGTTCTCAA CTTGGAGCTG
    TGTTAGGAAT GCTTGGGGAC TGCTGTCGGA CCTTGGGAGA TGCTCCTTCA
    GCAATCACTT ACTATGAAGA AAGTGCTGAA TTCCTCTCGA AATTGCCCAA
    AAAAGATCTG GAGTTGGTCC ATACTCTCTC AGTTTCACTA AATAAAATTG
    GAGATCTTCG CTATTATGAT GGGGACCTCC ACTCAGCAAG AAGCTATTAT
    GCGCGTTCGT TGGATGTTCT CAGAAGTGCA GCAAAAGAAC ACTCAGCTGT
    GGCTTCCCAG GTCATTGATG TAGCAACTTC TCTTGCCAAA GTTGCGGATG
    TCGATAGAAA TCTTGGGAAC GAAAGCATGG CAGTTGAGGG TTTTGAGGAA
    GCAATTAAAT GCCTTGAGAA TTTGAAGCTG GAATCTGGAG AGGCCAGTCT
    TGAGCAGCGG CGTCTCTCGG TTCTCGACTT TCTACAAAAA CAATTGGATG
    ACAAGTGATA TGCACGGTTC TAATTTGAAG AGCACACTCA CAGGATATAT
    GCACTATCCA TAATGAGGAT CAGCTCCAGT ACGTAGTCTC TGTGATGCAT
    ATGGAAGGGA GTTGCTCCAG ATCGAATGAA TGGTAACTGG TGTGTATTTG
    AGGTTTGCTG CGACACAGAA TAAATACTTT CGAGTTGTAT ATGTTTCTTG
    TGTCTGCCAC GGGTGGAGAC CTCTTTGAGT CCCTGAGGCA CCACGGAGAC
    GAAACTTCTC GGAAGTACTG ATTCCTTGTT GCCTCTGCCG TGTTATGTGA
    ATGTTATCCC ACTGTATATT TATTGATGAT ATAATATAAG AAAAGAACAG
    CACAGATGTT TTGTATCGCC CTATCAAATT TAAGTTGTTT TGCG

    Gene models with high sequence identity

    1. AT3G54360.1 [+] show detail - zinc ion binding
      E-value: 5e-120; Score: 428.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, RING-type 11.501
    HMMSmart Zinc finger, RING-type 0.0014
    superfamily TPR-like 7.2e-10
    superfamily RING/U-box 3.8e-09
    PatternScan Zinc finger, RING-type, conserved site 0
    Gene3D no description 8.1e-05
    HMMPanther SUBFAMILY NOT NAMED 2.2e-05
    HMMPanther FAMILY NOT NAMED 2.2e-05

    See the detailed result >

    AT3G54360.1

    Model type
    Protein coding
    Short Description
    zinc ion binding
    Computational Description
    zinc ion binding; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); Has 748 Blast hits to 691 proteins in 131 species: Archae - 16; Bacteria - 104; Metazoa - 470; Fungi - 16; Plants - 58; Viruses - 8; Other Eukaryotes - 76 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR
  • J023034B10 - Rice Full-length cDNAs - Original: J023034B10

    full reading [+] show sequence

    Nucleotide sequence: J023034B10 - full reading
    GTCGTCGATC TCACGCTACC CTCGATCGAG CTCTCTCTGC GGCAAACCCC 
    TCCCTCCTTC CCACCCAAGG GGGAAAGCTC CGCCGCCATC GTCGTGCTGC
    TCCCCGTTCC CGCGGATCCA TCCGGGGCTC TGGGTTGATC TACCTCGCCG
    TGACAAACAG TGAGTCGGCA TAAATTTTGG TACAGTTGAG AAGTTCTTGT
    GTTGGACATA TCCCTCCTCC CCTAGAAATA AGAAGCTGCT TAAGTTCACT
    ATGTCTGGAA TGCCATCTGA TGAGGCAACT GGTCAAGTGA GGCTCGAAGG
    AGATGTTTCT GACAAAAAGG AAGAAAAAAC TCAAGAGCAG AGCGAAGCAA
    GTGGAATGCC CTCACCACAA GAAGAGGAAG CAGCCATCAA GAAAAAATAT
    GGTGGAATAC TGCCCAAGAG GACGCCACAT ATAACTAAGG ATCATGATCG
    GGCTTACTTT GATTCTGCTG ATTGGGCTCT AGGCAAGCAA GGTGGAAGCC
    ACAAACCTAA AGGGCCTCTT GAAGCACTTC GACCAAAACT TCAGCCTACT
    CAACAACATG CACGTGCTCG GCGGACTCCC TATGCATCTG CTGACAATGA
    TGAGTGTATG AATTTGCCTC CTGAGGATTT GATCCAGAAT GGTGATCCCA
    TCGAAGACAA GAACAAGGAA GAACAGTAAC GAGTAGCTGC ACCCTGTCTA
    TTTGGAGCGT TGCCAATCCT GTCCTCGAGC CAAACTGTTG CCTTGGTAAA
    TAACTAGAGC CAATGCCTAC ACTTGTGGGG TTGAGCTCTG CAGTGTTTAA
    CTTAAACGTA AGACGTGGTA TGTCTGGCGT CTACCACATT CAGCTGTTCA
    GTGTCTTTCT GGCATCTGTA ACAGCTAGGA ATGAAAACTT ACATATGATG
    CTGTGATACC GATGCTGTAG TACCTGATGT GCAAAGAAAC AAATAATGCT
    TCAAATTCAG CTCCCCATGA ATGGAAATTA GCC

    Gene models with high sequence identity

    1. AT5G64130.1 [+] show detail - cAMP-regulated phosphoprotein 19-related protein
      E-value: 1e-29; Score: 127.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G64130.1

    Model type
    Protein coding
    Short Description
    cAMP-regulated phosphoprotein 19-related protein
    Computational Description
    cAMP-regulated phosphoprotein 19-related protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: cAMP-regulated phosphoprotein/endosulphine conserved region (InterPro:IPR006760); BEST Arabidopsis thaliana protein match is: cAMP-regulated phosphoprotein 19-related protein (TAIR:AT1G69510.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR