K19117

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19117

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	increased size (PATO:0000586) (Rosette leaf::Shape::large)
	stem (PO:0009047)	increased thickness (PATO:0000591) (Stem::Shape::thick)

Invisible phenotypes

Hormones::Others::increase total Auxin

Original: K19117

Determination of introduced cDNA(s)

J033124L02 - Rice Full-length cDNAs - Original: J033124L02

full reading [+] show sequence

GGGCGCAAAC AGTACACGCT CTCCTCCTCC TCCTCGCTGT CTCCCACTCC 
CATCCCAATG GCGGCGGCGG CGGAGGACGT GGAGTTCGTC GACTACGACC 
GCGACGAGGA GGAGGAGGAG GACGCCATGG ACGAGGTCGA TCGGGGCGGT 
GGCCGCGGCG GGCGCGCGCT ACCCGTACCC CACATCGTCT CCCAGGGCGT 
GATGCGCTCG CGCGGCCGCC TCCTCGGCCG CAGCACCTCC GTGCTCGCCT 
CCAACCGCGA CCGCTTCGAC TCCCTCGCCG ATGCCGGCAA CCCCGGCCAC 
GGCCCACAGC GCTCTATTGA AGGATGGATA CTACTGGTCT CTGGAGTCAA 
AGAAGACGCG GAAGAAGATG ATCTGTACAA CACTTTCAGT GATTTTGGTC 
ATGTTAAGGA CCTACATTTA AATCTGGAAC GCCGCACTGG ATATGCCAAG 
GGATATGCAT TAGTTGAATA TGAAAGTTTT GAGGAAGCAC AAACTGCAAT 
CAAAGCAATG AATGGGACTC AGCTGTTAAC AAGGACTGTC TATGTTGACT 
GGGCATTCAG CAGAGGTCCT ATACAGAAAC TCACCAGTAC AAGGCCATTA 
CATCGGCGAT CTCGGACTCC ACCTCGCAGG CTTGCTGCCT TGACATGTTG 
ACTGGGAGCT ACTATGTCCG CAATCCTGAA TGTTCTCGGT CTGTGTTTTT 
TGATAGATGG TACGAACGTA GTCTTAACCG ATGTATGGTG TGATATATCT 
TCCAGATCCA GCCCCCCTGA GTCTTGATTC TGCTATCCTT ATATATCTGC 
ACTAAGTTTG ATCAACTTTG TTTGTTGAAC TATGTTCTCG GTTGCTGGCC 
TGTGGTAGAG GCTGTTGTAC TGACTGAGTA CGCTAGCTAG AAGGTATATT 
GTGTAGTGAT GACGTTGAGA TGGAAGTGTC TGCCGACTTA AAAGCCTACT 
ACTACATTTT AAGGAAAACA ACTTTCGT

Gene models with high sequence identity

AT1G51510.1 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
E-value: 1e-35; Score: 147.00

InterPro Scan Digest

Program	Description	E-value
ProfileScan	RNA recognition motif, RNP-1	16.364
Gene3D	Nucleotide-binding, alpha-beta plait	7.9e-26
FPrintScan	RNA binding motif protein 8	1.6e-13
FPrintScan	RNA binding motif protein 8	1.6e-13
FPrintScan	RNA binding motif protein 8	1.6e-13
FPrintScan	RNA binding motif protein 8	1.6e-13
HMMPanther	SPLICEOSOME ASSOCIATED PROTEIN	7e-15
HMMPanther	RNA-BINDING PROTEIN	7e-15
HMMPfam	RNA recognition motif, RNP-1	1.5e-16
superfamily	RNA-binding domain, RBD	7.8e-24
HMMSmart	RNA recognition motif, RNP-1	3e-19

See the detailed result >

AT1G51510.1

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Curator Summary: This gene is predicted to encode a protein involved in the exon junction complex. Though there is a predicted RNA binding motif, in the Drosophila ortholog (33% identity), this motif mediates interactions with Mago and is not available for RNA binding. The Arabidopsis Y14 protein appears to be predominantly nucleolar, but there is also some evidence for its presence in the cytoplasm.
Computational Description: Y14; FUNCTIONS IN: protein binding, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: nucleoplasm, exon-exon junction complex, nuclear body, nucleolus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA-binding motif protein 8 (InterPro:IPR008111); BEST Arabidopsis thaliana protein match is: ortholog of human splicing factor SC35 (TAIR:AT5G64200.2); Has 11259 Blast hits to 10017 proteins in 625 species: Archae - 2; Bacteria - 976; Metazoa - 6273; Fungi - 1165; Plants - 1793; Viruses - 0; Other Eukaryotes - 1050 (source: NCBI BLink).
Link: InterPro Scan - TAIR

J033115O22 - Rice Full-length cDNAs - Original: J033115O22

full reading [+] show sequence

GAAGGCCTTC GTCTCGACAC GTTTGCATTG CAGCAGCTCA TAAGTTTCTT 
CTTCGTTTCT GCTCCCAGTG CTAAGGCAGC ACAGTCGTTC GTCGCCATGC 
CAGGGCTCAC CATCGGCGAC ACCGTCCCCA ACCTGGAGCT GGACTCCACC 
CACGGCAAGA TCCGCATCCA CGACTTCGTC GGCGACACCT ATGTCATCCT 
CTTCTCCCAC CCCGGCGACT TCACCCCGGT CTGCACCACG GAGCTGGCAG 
CCATGGCCGG CTACGCCAAG GAGTTCGACA AGAGGGGCGT CAAGCTGCTC 
GGCATCTCCT GCGACGACGT GCAGTCTCAC AAGGACTGGA TCAAGGACAT 
CGAGGCCTAC AAGCCTGGGA ACCGCGTGAC GTACCCGATC ATGGCCGATC 
CGAGCCGCGA GGCCATCAAG CAGCTGAACA TGGTCGACCC GAACGAGAAG 
GATTCCAACG GCGGCCACCT CCCGTCCCGC GCGCTGCACA TCGTCGGCCC 
CGACAAGAAG GTGAAGCTGA GCTTCCTGTA CCCGGCGTGC GTGGGGCGGA 
ACATGGATGA GGTGGTGCGT GCGGTCGACG CGCTGCAGAC GGCGGCGAAG 
CACGCGGTGG CGACGCCGGT GAACTGGAAG CCCGGCGAGC GCGTCGTCAT 
CCCTCCCGGC GTCTCCGACG ACGAGGCGAA GGAGAAGTTC CCCCAGGGGT 
TCGACACCGC CGACCTGCCG TCCGGCAAGG GCTACCTCCG CTTCACCAAG 
GTCGGCTAGA TCATATCGAT ATCGACCTCG CTCTTCGTAC ATCATGTGCG 
CCACGCGTGC GTGATAGCGT GTGCTGGCGT GATGACTATG CGAGATGCAT 
CCCTGTGTGT GTTGGTGTGG ATAATGCCGC TACGTTTGGA ACAGTAGTGC 
ATTTACTCTG TGCTACTGTC TGAACTTTGG CTGTTTGGCA GACTGTTTAT 
GTACCCGTAT GTTCGCCCCT GTACTAATAG AGTGGGTGTT GTGGTTGGCA 
AGTACTCTCC TCGGACAACA TTTAACTTTG ACTACTAATA ACAAACAAAT 
TAAAAAGATC AATCAGATGT TACTAGACAT CTTAATTTTA TT

Gene models with high sequence identity

AT1G48130.1 [+] show detail - 1-cysteine peroxiredoxin 1
E-value: 6e-88; Score: 321.00

InterPro Scan Digest

Program	Description	E-value
ProfileScan	Thioredoxin-like	17.208
Gene3D	Thioredoxin fold	1.3e-54
HMMPfam	Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen	7e-32
HMMPfam	Peroxiredoxin, C-terminal	1.1e-14
superfamily	Thioredoxin-like fold	2.5e-63
HMMPanther	PEROXIREDOXIN 6 RELATED	1.9e-127
HMMPanther	PEROXIREDOXIN	1.9e-127

See the detailed result >

AT1G48130.1

Model type: Protein coding
Short Description: 1-cysteine peroxiredoxin 1
Curator Summary: encodes a protein similar to the 1-cysteine (1-Cys) peroxiredoxin family of antioxidants. Expression is limited to seed (aleurone and embryo) and is not induced by ABA or drought.
Computational Description: 1-cysteine peroxiredoxin 1 (PER1); FUNCTIONS IN: thioredoxin peroxidase activity, antioxidant activity; INVOLVED IN: maintenance of seed dormancy, response to desiccation; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, aleurone layer, seed; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Peroxiredoxin, C-terminal (InterPro:IPR019479), Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: 2-cysteine peroxiredoxin B (TAIR:AT5G06290.1); Has 11559 Blast hits to 11559 proteins in 2567 species: Archae - 531; Bacteria - 7064; Metazoa - 1157; Fungi - 321; Plants - 349; Viruses - 0; Other Eukaryotes - 2137 (source: NCBI BLink).
Link: InterPro Scan - TAIR