K19117

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19117

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)

Invisible phenotypes

Original: K19117

Determination of introduced cDNA(s)

  • J033124L02 - Rice Full-length cDNAs - Original: J033124L02

    full reading [+] show sequence

    Nucleotide sequence: J033124L02 - full reading 
    GGGCGCAAAC AGTACACGCT CTCCTCCTCC TCCTCGCTGT CTCCCACTCC 
    CATCCCAATG GCGGCGGCGG CGGAGGACGT GGAGTTCGTC GACTACGACC 
    GCGACGAGGA GGAGGAGGAG GACGCCATGG ACGAGGTCGA TCGGGGCGGT 
    GGCCGCGGCG GGCGCGCGCT ACCCGTACCC CACATCGTCT CCCAGGGCGT 
    GATGCGCTCG CGCGGCCGCC TCCTCGGCCG CAGCACCTCC GTGCTCGCCT 
    CCAACCGCGA CCGCTTCGAC TCCCTCGCCG ATGCCGGCAA CCCCGGCCAC 
    GGCCCACAGC GCTCTATTGA AGGATGGATA CTACTGGTCT CTGGAGTCAA 
    AGAAGACGCG GAAGAAGATG ATCTGTACAA CACTTTCAGT GATTTTGGTC 
    ATGTTAAGGA CCTACATTTA AATCTGGAAC GCCGCACTGG ATATGCCAAG 
    GGATATGCAT TAGTTGAATA TGAAAGTTTT GAGGAAGCAC AAACTGCAAT 
    CAAAGCAATG AATGGGACTC AGCTGTTAAC AAGGACTGTC TATGTTGACT 
    GGGCATTCAG CAGAGGTCCT ATACAGAAAC TCACCAGTAC AAGGCCATTA 
    CATCGGCGAT CTCGGACTCC ACCTCGCAGG CTTGCTGCCT TGACATGTTG 
    ACTGGGAGCT ACTATGTCCG CAATCCTGAA TGTTCTCGGT CTGTGTTTTT 
    TGATAGATGG TACGAACGTA GTCTTAACCG ATGTATGGTG TGATATATCT 
    TCCAGATCCA GCCCCCCTGA GTCTTGATTC TGCTATCCTT ATATATCTGC 
    ACTAAGTTTG ATCAACTTTG TTTGTTGAAC TATGTTCTCG GTTGCTGGCC 
    TGTGGTAGAG GCTGTTGTAC TGACTGAGTA CGCTAGCTAG AAGGTATATT 
    GTGTAGTGAT GACGTTGAGA TGGAAGTGTC TGCCGACTTA AAAGCCTACT 
    ACTACATTTT AAGGAAAACA ACTTTCGT

    Gene models with high sequence identity

    1. AT1G51510.1 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
      E-value: 1e-35; Score: 147.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan RNA recognition motif, RNP-1 16.364
    Gene3D Nucleotide-binding, alpha-beta plait 7.9e-26
    FPrintScan RNA binding motif protein 8 0.00000000000016
    FPrintScan RNA binding motif protein 8 0.00000000000016
    FPrintScan RNA binding motif protein 8 0.00000000000016
    FPrintScan RNA binding motif protein 8 0.00000000000016
    HMMPanther SPLICEOSOME ASSOCIATED PROTEIN 0.000000000000007
    HMMPanther RNA-BINDING PROTEIN 0.000000000000007
    HMMPfam RNA recognition motif, RNP-1 1.5e-16
    superfamily RNA-binding domain, RBD 7.8e-24
    HMMSmart RNA recognition motif, RNP-1 3e-19

    See the detailed result >

    AT1G51510.1

    Model type
    Protein coding
    Short Description
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Curator Summary
    This gene is predicted to encode a protein involved in the exon junction complex. Though there is a predicted RNA binding motif, in the Drosophila ortholog (33% identity), this motif mediates interactions with Mago and is not available for RNA binding. The Arabidopsis Y14 protein appears to be predominantly nucleolar, but there is also some evidence for its presence in the cytoplasm.
    Computational Description
    Y14; FUNCTIONS IN: protein binding, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: nucleoplasm, exon-exon junction complex, nuclear body, nucleolus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA-binding motif protein 8 (InterPro:IPR008111); BEST Arabidopsis thaliana protein match is: ortholog of human splicing factor SC35 (TAIR:AT5G64200.2); Has 11259 Blast hits to 10017 proteins in 625 species: Archae - 2; Bacteria - 976; Metazoa - 6273; Fungi - 1165; Plants - 1793; Viruses - 0; Other Eukaryotes - 1050 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

  • J033115O22 - Rice Full-length cDNAs - Original: J033115O22

    full reading [+] show sequence

    Nucleotide sequence: J033115O22 - full reading 
    GAAGGCCTTC GTCTCGACAC GTTTGCATTG CAGCAGCTCA TAAGTTTCTT 
    CTTCGTTTCT GCTCCCAGTG CTAAGGCAGC ACAGTCGTTC GTCGCCATGC 
    CAGGGCTCAC CATCGGCGAC ACCGTCCCCA ACCTGGAGCT GGACTCCACC 
    CACGGCAAGA TCCGCATCCA CGACTTCGTC GGCGACACCT ATGTCATCCT 
    CTTCTCCCAC CCCGGCGACT TCACCCCGGT CTGCACCACG GAGCTGGCAG 
    CCATGGCCGG CTACGCCAAG GAGTTCGACA AGAGGGGCGT CAAGCTGCTC 
    GGCATCTCCT GCGACGACGT GCAGTCTCAC AAGGACTGGA TCAAGGACAT 
    CGAGGCCTAC AAGCCTGGGA ACCGCGTGAC GTACCCGATC ATGGCCGATC 
    CGAGCCGCGA GGCCATCAAG CAGCTGAACA TGGTCGACCC GAACGAGAAG 
    GATTCCAACG GCGGCCACCT CCCGTCCCGC GCGCTGCACA TCGTCGGCCC 
    CGACAAGAAG GTGAAGCTGA GCTTCCTGTA CCCGGCGTGC GTGGGGCGGA 
    ACATGGATGA GGTGGTGCGT GCGGTCGACG CGCTGCAGAC GGCGGCGAAG 
    CACGCGGTGG CGACGCCGGT GAACTGGAAG CCCGGCGAGC GCGTCGTCAT 
    CCCTCCCGGC GTCTCCGACG ACGAGGCGAA GGAGAAGTTC CCCCAGGGGT 
    TCGACACCGC CGACCTGCCG TCCGGCAAGG GCTACCTCCG CTTCACCAAG 
    GTCGGCTAGA TCATATCGAT ATCGACCTCG CTCTTCGTAC ATCATGTGCG 
    CCACGCGTGC GTGATAGCGT GTGCTGGCGT GATGACTATG CGAGATGCAT 
    CCCTGTGTGT GTTGGTGTGG ATAATGCCGC TACGTTTGGA ACAGTAGTGC 
    ATTTACTCTG TGCTACTGTC TGAACTTTGG CTGTTTGGCA GACTGTTTAT 
    GTACCCGTAT GTTCGCCCCT GTACTAATAG AGTGGGTGTT GTGGTTGGCA 
    AGTACTCTCC TCGGACAACA TTTAACTTTG ACTACTAATA ACAAACAAAT 
    TAAAAAGATC AATCAGATGT TACTAGACAT CTTAATTTTA TT

    Gene models with high sequence identity

    1. AT1G48130.1 [+] show detail - 1-cysteine peroxiredoxin 1
      E-value: 6e-88; Score: 321.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Thioredoxin-like 17.208
    Gene3D Thioredoxin fold 1.3e-54
    HMMPfam Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 7e-32
    HMMPfam Peroxiredoxin, C-terminal 0.000000000000011
    superfamily Thioredoxin-like fold 2.5e-63
    HMMPanther PEROXIREDOXIN 6 RELATED 1.9e-127
    HMMPanther PEROXIREDOXIN 1.9e-127

    See the detailed result >

    AT1G48130.1

    Model type
    Protein coding
    Short Description
    1-cysteine peroxiredoxin 1
    Curator Summary
    encodes a protein similar to the 1-cysteine (1-Cys) peroxiredoxin family of antioxidants. Expression is limited to seed (aleurone and embryo) and is not induced by ABA or drought.
    Computational Description
    1-cysteine peroxiredoxin 1 (PER1); FUNCTIONS IN: thioredoxin peroxidase activity, antioxidant activity; INVOLVED IN: maintenance of seed dormancy, response to desiccation; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, aleurone layer, seed; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Peroxiredoxin, C-terminal (InterPro:IPR019479), Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: 2-cysteine peroxiredoxin B (TAIR:AT5G06290.1); Has 11559 Blast hits to 11559 proteins in 2567 species: Archae - 531; Bacteria - 7064; Metazoa - 1157; Fungi - 321; Plants - 349; Viruses - 0; Other Eukaryotes - 2137 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR