K19117

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19117

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)

Invisible phenotypes

Original: K19117

Determination of introduced cDNA(s)

  • J033124L02 - Rice Full-length cDNAs - Original: J033124L02

    full reading [+] show sequence

    Nucleotide sequence: J033124L02 - full reading
    GGGCGCAAAC AGTACACGCT CTCCTCCTCC TCCTCGCTGT CTCCCACTCC 
    CATCCCAATG GCGGCGGCGG CGGAGGACGT GGAGTTCGTC GACTACGACC
    GCGACGAGGA GGAGGAGGAG GACGCCATGG ACGAGGTCGA TCGGGGCGGT
    GGCCGCGGCG GGCGCGCGCT ACCCGTACCC CACATCGTCT CCCAGGGCGT
    GATGCGCTCG CGCGGCCGCC TCCTCGGCCG CAGCACCTCC GTGCTCGCCT
    CCAACCGCGA CCGCTTCGAC TCCCTCGCCG ATGCCGGCAA CCCCGGCCAC
    GGCCCACAGC GCTCTATTGA AGGATGGATA CTACTGGTCT CTGGAGTCAA
    AGAAGACGCG GAAGAAGATG ATCTGTACAA CACTTTCAGT GATTTTGGTC
    ATGTTAAGGA CCTACATTTA AATCTGGAAC GCCGCACTGG ATATGCCAAG
    GGATATGCAT TAGTTGAATA TGAAAGTTTT GAGGAAGCAC AAACTGCAAT
    CAAAGCAATG AATGGGACTC AGCTGTTAAC AAGGACTGTC TATGTTGACT
    GGGCATTCAG CAGAGGTCCT ATACAGAAAC TCACCAGTAC AAGGCCATTA
    CATCGGCGAT CTCGGACTCC ACCTCGCAGG CTTGCTGCCT TGACATGTTG
    ACTGGGAGCT ACTATGTCCG CAATCCTGAA TGTTCTCGGT CTGTGTTTTT
    TGATAGATGG TACGAACGTA GTCTTAACCG ATGTATGGTG TGATATATCT
    TCCAGATCCA GCCCCCCTGA GTCTTGATTC TGCTATCCTT ATATATCTGC
    ACTAAGTTTG ATCAACTTTG TTTGTTGAAC TATGTTCTCG GTTGCTGGCC
    TGTGGTAGAG GCTGTTGTAC TGACTGAGTA CGCTAGCTAG AAGGTATATT
    GTGTAGTGAT GACGTTGAGA TGGAAGTGTC TGCCGACTTA AAAGCCTACT
    ACTACATTTT AAGGAAAACA ACTTTCGT

    Gene models with high sequence identity

    1. AT1G51510.1 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
      E-value: 1e-35; Score: 147.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan RNA recognition motif, RNP-1 16.364
    Gene3D Nucleotide-binding, alpha-beta plait 7.9e-26
    FPrintScan RNA binding motif protein 8 1.6e-13
    FPrintScan RNA binding motif protein 8 1.6e-13
    FPrintScan RNA binding motif protein 8 1.6e-13
    FPrintScan RNA binding motif protein 8 1.6e-13
    HMMPanther SPLICEOSOME ASSOCIATED PROTEIN 7e-15
    HMMPanther RNA-BINDING PROTEIN 7e-15
    HMMPfam RNA recognition motif, RNP-1 1.5e-16
    superfamily RNA-binding domain, RBD 7.8e-24
    HMMSmart RNA recognition motif, RNP-1 3e-19

    See the detailed result >

    AT1G51510.1

    Model type
    Protein coding
    Short Description
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Curator Summary
    This gene is predicted to encode a protein involved in the exon junction complex. Though there is a predicted RNA binding motif, in the Drosophila ortholog (33% identity), this motif mediates interactions with Mago and is not available for RNA binding. The Arabidopsis Y14 protein appears to be predominantly nucleolar, but there is also some evidence for its presence in the cytoplasm.
    Computational Description
    Y14; FUNCTIONS IN: protein binding, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: nucleoplasm, exon-exon junction complex, nuclear body, nucleolus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA-binding motif protein 8 (InterPro:IPR008111); BEST Arabidopsis thaliana protein match is: ortholog of human splicing factor SC35 (TAIR:AT5G64200.2); Has 11259 Blast hits to 10017 proteins in 625 species: Archae - 2; Bacteria - 976; Metazoa - 6273; Fungi - 1165; Plants - 1793; Viruses - 0; Other Eukaryotes - 1050 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR
  • J033115O22 - Rice Full-length cDNAs - Original: J033115O22

    full reading [+] show sequence

    Nucleotide sequence: J033115O22 - full reading
    GAAGGCCTTC GTCTCGACAC GTTTGCATTG CAGCAGCTCA TAAGTTTCTT 
    CTTCGTTTCT GCTCCCAGTG CTAAGGCAGC ACAGTCGTTC GTCGCCATGC
    CAGGGCTCAC CATCGGCGAC ACCGTCCCCA ACCTGGAGCT GGACTCCACC
    CACGGCAAGA TCCGCATCCA CGACTTCGTC GGCGACACCT ATGTCATCCT
    CTTCTCCCAC CCCGGCGACT TCACCCCGGT CTGCACCACG GAGCTGGCAG
    CCATGGCCGG CTACGCCAAG GAGTTCGACA AGAGGGGCGT CAAGCTGCTC
    GGCATCTCCT GCGACGACGT GCAGTCTCAC AAGGACTGGA TCAAGGACAT
    CGAGGCCTAC AAGCCTGGGA ACCGCGTGAC GTACCCGATC ATGGCCGATC
    CGAGCCGCGA GGCCATCAAG CAGCTGAACA TGGTCGACCC GAACGAGAAG
    GATTCCAACG GCGGCCACCT CCCGTCCCGC GCGCTGCACA TCGTCGGCCC
    CGACAAGAAG GTGAAGCTGA GCTTCCTGTA CCCGGCGTGC GTGGGGCGGA
    ACATGGATGA GGTGGTGCGT GCGGTCGACG CGCTGCAGAC GGCGGCGAAG
    CACGCGGTGG CGACGCCGGT GAACTGGAAG CCCGGCGAGC GCGTCGTCAT
    CCCTCCCGGC GTCTCCGACG ACGAGGCGAA GGAGAAGTTC CCCCAGGGGT
    TCGACACCGC CGACCTGCCG TCCGGCAAGG GCTACCTCCG CTTCACCAAG
    GTCGGCTAGA TCATATCGAT ATCGACCTCG CTCTTCGTAC ATCATGTGCG
    CCACGCGTGC GTGATAGCGT GTGCTGGCGT GATGACTATG CGAGATGCAT
    CCCTGTGTGT GTTGGTGTGG ATAATGCCGC TACGTTTGGA ACAGTAGTGC
    ATTTACTCTG TGCTACTGTC TGAACTTTGG CTGTTTGGCA GACTGTTTAT
    GTACCCGTAT GTTCGCCCCT GTACTAATAG AGTGGGTGTT GTGGTTGGCA
    AGTACTCTCC TCGGACAACA TTTAACTTTG ACTACTAATA ACAAACAAAT
    TAAAAAGATC AATCAGATGT TACTAGACAT CTTAATTTTA TT

    Gene models with high sequence identity

    1. AT1G48130.1 [+] show detail - 1-cysteine peroxiredoxin 1
      E-value: 6e-88; Score: 321.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Thioredoxin-like 17.208
    Gene3D Thioredoxin fold 1.3e-54
    HMMPfam Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 7e-32
    HMMPfam Peroxiredoxin, C-terminal 1.1e-14
    superfamily Thioredoxin-like fold 2.5e-63
    HMMPanther PEROXIREDOXIN 6 RELATED 1.9e-127
    HMMPanther PEROXIREDOXIN 1.9e-127

    See the detailed result >

    AT1G48130.1

    Model type
    Protein coding
    Short Description
    1-cysteine peroxiredoxin 1
    Curator Summary
    encodes a protein similar to the 1-cysteine (1-Cys) peroxiredoxin family of antioxidants. Expression is limited to seed (aleurone and embryo) and is not induced by ABA or drought.
    Computational Description
    1-cysteine peroxiredoxin 1 (PER1); FUNCTIONS IN: thioredoxin peroxidase activity, antioxidant activity; INVOLVED IN: maintenance of seed dormancy, response to desiccation; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, aleurone layer, seed; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Peroxiredoxin, C-terminal (InterPro:IPR019479), Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: 2-cysteine peroxiredoxin B (TAIR:AT5G06290.1); Has 11559 Blast hits to 11559 proteins in 2567 species: Archae - 531; Bacteria - 7064; Metazoa - 1157; Fungi - 321; Plants - 349; Viruses - 0; Other Eukaryotes - 2137 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR