K19121

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19121

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19121

Determination of introduced cDNA(s)

  • J023099N07 - Rice Full-length cDNAs - Original: J023099N07

    full reading [+] show sequence

    Nucleotide sequence: J023099N07 - full reading 
    TCGACCCGAA GAGCCGGCAC AAGGGGAAGC TGGAGACGGA GGGCCTGCTG 
    GAGACCCGGG ACGTGAACTG GACGTCGATC AGGCCGGTGT ACATCTACGG 
    CCCGCTCAAC TACAACCCCG TGGAGGAGTG GTTCTTCCAC CGGCTCAAGG 
    CTGGCCGCCC CATCCCTGTC CCCGGTGCCG GCAACCAAAT CACCCAGCTC 
    GGCCATGTCA AGGACTTGGC GACGGCGTTC GTGCTGGCGC TCGGCAACCC 
    GAAGGCGAGC AAGCAGGTGT TCAACATCTC CGGCGCCAAG TACGTCACCT 
    TCGACGGTCT AGCACGGGCG TGCGCCAAGG CTGGAGGATT CCCCGAGCCG 
    GAGATCGTCC ACTACAACCC CAAGGACTTC GATTTCGGGA AGAAGAAGGC 
    CTTCCCCTTC AGAGACCAGC ATTTCTTCGC GTCAATCGAG AAGGCGACCT 
    TGGAGCTCGG GTGGAAGCCG GAGTACGACC TGGTGGAGGG CCTCACCGAC 
    TCGTACAACC TCGACTTCGG CCGCGGCACG TTCAGGAAGG CGGCCGACTT 
    CACCACCGAC GACATGATCC TCGGCAAGAA GCTCGTCAGC GTCTGAGCTC 
    GCCGCCGTCC TTTCCGGACA GCGGACGGAT TGCTTGCTGC GCGACGCGAG 
    CGGCTGACCG GCCGGGCCGC CATGGCCGGT GGGCAGGAGC AAGCGGAGAC 
    GGTTTCAGTT TTGTTATCAA CGCTGGTTTG GTACAATATG GATAGTTGGA 
    TACACGCGTA CAGGCGTAAG CTGCAATGTA TTGGGATTGG GAAACTGTAA 
    GATGTGATAC AAGGGAGACT AAACTTCATC TAATATATAT GATATAACTA 
    GC

    Gene models with high sequence identity

    1. AT1G09340.1 [+] show detail - chloroplast RNA binding
      E-value: 4e-100; Score: 361.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D NAD(P)-binding domain 7.8e-07
    HMMPanther NAD DEPENDENT EPIMERASE/DEHYDRATASE 1.5e-58
    HMMPanther NAD DEPENDENT EPIMERASE/DEHYDRATASE 1.5e-58
    superfamily NAD(P)-binding domain 6.8e-28
    HMMPfam NAD-dependent epimerase/dehydratase 3.6e-09

    See the detailed result >

    AT1G09340.1

    Model type
    Protein coding
    Short Description
    chloroplast RNA binding
    Curator Summary
    Encodes CHLOROPLAST RNA BINDING (CRB), a putative RNA-binding protein. CRB is important for the proper functioning of the chloroplast. Mutations in CRB also affects the circadian system, altering the expression of both oscillator and output genes.
    Computational Description
    chloroplast RNA binding (CRB); FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: in 6 processes; LOCATED IN: in 10 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: chloroplast stem-loop binding protein of 41 kDa (TAIR:AT3G63140.1); Has 5936 Blast hits to 5936 proteins in 1402 species: Archae - 366; Bacteria - 3891; Metazoa - 108; Fungi - 58; Plants - 234; Viruses - 3; Other Eukaryotes - 1276 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR