K19122

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19122

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19122

Determination of introduced cDNA(s)

  • J033084M22 - Rice Full-length cDNAs - Original: J033084M22

    full reading [+] show sequence

    Nucleotide sequence: J033084M22 - full reading 
    GGAAACAAAC CCACTCACCC CAGTCCCGTG TATTCCCCGC TCTTCCGCCT 
    TCCGCGCCAC CAACCCGCGA ACCCTAAAAA CCCTAGCGCC TACGCGCACC 
    AATCCACCGG AGAGGGGAGG CGGGGAAGCG GCCATGGCGG AGCACGACCT 
    GACGGCGCGG ATGGCGGGGC ACCTGGACTG CCACCTGGTG CTCCCGCTGC 
    TGGAGTTCCT GCAGGAGCGG CACCTCTACC CGGAGGAGGA GATCCTCGAG 
    GCGAAGATCC GCCTCCTCCG GGGCACCAAC ATGGTCGACT ACGCCATGGA 
    CATCCACAAG TCGCGCTACG GCACCGACGA CGTCCCCGAG GACATGGTCA 
    AGCGCCGCGC CGAGGTCGTC TCCAGGCTCA CCTCGCTCGG CGAGGCCATC 
    GACAACATCC ACCAGAACCA GCAGATTGGT CCTGATCAGA TTGAGACTCT 
    GTATCAGTAT GCCAAATTTC AGTTTGACTG TGGGAATTAC TCATTTGCTG 
    CTCAGTACTT GCATCAATAC CGTGCTCTGT GCACAAACAT TGAGAGGAGC 
    TTGAGTGCCC TGTGGGGAAA GCTGGCAGCT GAGATTTTGA TGCAGAACTG 
    GGATGTTGCA CTGGAGGAGC TCAACCGTTT GAAGGAGATT ATTGATTCAA 
    AGAACTTCTC TTCACCGCTA AATCAGCTTC AGAATAGGAT ATGGCTGATG 
    CACTGGAGTA TCTTTATCTT CTACAACCAT GAAAACGGCA GAAATGGGAT 
    CATAGATCTG TTCTTCCAGG AGAGGTACTT GAATGCAATC CAGACAAATG 
    CACCACATCT TCTGAGATAC CTTGCTACAG CAGTTGTTGT GAACAAAAGG 
    AGAAGGAATA TGCTTAAGGA GTTGATTAAA GTCATTCAGC AGGAGCAGCA 
    CAGCTACAAG GATCCCATTA CTGAATTTCT GGAATGCTTG TTTGTTAACT 
    ATGATTTTGA TGGCGCACAA CAGAAACTCA TAGGGTGTGA GGAGGTCATA 
    TTGAATGATC CTTTCCTGGG AAAGCGCATT GAGGAAGGGA ATTCCATCAC 
    TGTTCCTTTG GGAGATGAAT TCCTTGAAAA TGCTCGTCTG TTTATCTTTG 
    AAACTTACTG CCGTATTCAT CGGTCCATTG ATATTGGCAT GCTCTCTCAG 
    AAACTGAACA TGCGCTATGA TGAAGGGGAG TTGTGGATAA TGAACTTAGT 
    TAGAAATTCA AAGCTCGATG CCAAGATTGA TTCAGTGTCT GGAACTCTTA 
    TCATGACGAC CAATCATGTT AACATCCACG AGCAGTTTAT CGAAAGCTTG 
    AAGAATCTTA ACATGCGGAC TTCCATGCTA GCAAAGAACA TTGTGGAGCC 
    AGCTCAAGCA ATGCAACAGG CAACTCGGTG ATATTGACAG AGAACATCAA 
    TTTTGAGGCG CCCAGAACTC GTGAAGTTAG ACAAACTATT AAACTTTTAG 
    CACCGACGTC GCGTTATTAG TACTTGCGAT TCCTCTATAA AGAAAAAGGA 
    TTCAACAACT AGTGTACAGA AATATTTCTA ATTACGTATC AAAGCTACTA 
    ATACAGCAAT ATCCCGGGGC AAAAGGAAAC CCAGGAGGTG TGTTCTCGTT 
    CGCTGCAGCA TATGCTGAAG TTTTTGTTAT TTTGTACTTG GAATCCTGTG 
    GCTGAACTGC TGAAGTTAAT CCTTTCTTTT GTACTAGACT GTACTAGAAT 
    CAAGCTTACC TGATTGTGGT GGTGTTTCGT GTGTCTGTGA AGTGCTGAAG 
    TGTGGTTGCT ATTTAGTTTC GAGTTCGATG CTTTTTGTCT AGATTCGGAA 
    AATGTTCTGT CGAATTATTC ATTTTTGC

    Gene models with high sequence identity

    1. AT3G57290.1 [+] show detail - eukaryotic translation initiation factor 3E
      E-value: 2e-167; Score: 586.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Eukaryotic translation initiation factor 3 (eIF3), subunit 6, N-terminal 3.3e-27
    HMMPfam Proteasome component (PCI) domain 2.3e-13
    superfamily "Winged helix" DNA-binding domain 9.4e-14
    superfamily TPR-like 1.6e-06
    HMMPanther EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SU 4.5e-183
    HMMPIR Translation initiation factor 3, subunit 6, eukaryotic 4.8e-234
    HMMSmart Proteasome component (PCI) domain 1.1e-11

    See the detailed result >

    AT3G57290.1

    Model type
    Protein coding
    Short Description
    eukaryotic translation initiation factor 3E
    Curator Summary
    Encodes a protein that is found in not only the eif3 complex but also in association with subunits of the COP9 signalosome. eIF3e appears to be subjected to proteasome-dependent degradation that requires the PCI domain of eIF3e. The level of eIF3e present in cells appears to affect the rate of translation.
    Computational Description
    eukaryotic translation initiation factor 3E (EIF3E); FUNCTIONS IN: protein binding, translation initiation factor activity; INVOLVED IN: flower development, response to salt stress, translation, photomorphogenesis, transcription initiation; LOCATED IN: signalosome, eukaryotic translation initiation factor 3 complex, nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor 3, subunit 6, eukaryotic (InterPro:IPR016650), Proteasome component (PCI) domain (InterPro:IPR000717), Eukaryotic translation initiation factor 3 (eIF3), subunit 6, N-terminal (InterPro:IPR019010); Has 641 Blast hits to 638 proteins in 243 species: Archae - 0; Bacteria - 2; Metazoa - 287; Fungi - 119; Plants - 138; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR