K19131

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19131

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19131

Determination of introduced cDNA(s)

  • J023028K01 - Rice Full-length cDNAs - Original: J023028K01

    full reading [+] show sequence

    Nucleotide sequence: J023028K01 - full reading 
    GAGAGAGAGA GAGAGCTGGA AATGGATCCC CTTTAAAAGC CGTTGCGTTG 
    GCTCTGCCGC CTTGGCAACA ACATCCAATT TCCAAACCAA GAGAGAAGCA 
    GCAGCGATGG CGATGCGGCA GGGAGCGCTG CGAGGCCCCT CCGATTACTC 
    CCAGGAGCCC ACCCGCCACC CCTCCCTGCG CATCAACGCC AAGGAGCCGT 
    TCAATGCGGA GGCGACGAGG CGGGACCTCG TGGCGTCCTA CATCACCCCC 
    GTGGATCTCT TCCTCAAGAG GAACCATGGC CCCATCCCCA TCCTCCGCGA 
    CATCGACAGC TACTATGTGA CGGTTGCCGG TCTGATAGAG AGGCCAGCGA 
    AGCTTTATCT GAATGACATC AAGAAGCTGC CCAAGTACAA TGTCACTGCC 
    ACTCTGCAGT GTGCAGAGAA CAGGAGGACC GAAATGAGCA AGAGCAGGAA 
    GGTGAGAGGC GTCGGATGGG ATGTCTGCGC TCTCGGGAAT GCGACATGGG 
    GAGGAGCTAA GTTATCTGAT GTCCTTCAGC TCATTGGTGT GCCATATCAT 
    ACTGAAATTA CTCCATCAGG AGGAAAGCAT GTTGAGTTCA CTAGTGTAGA 
    TCAGTGCCCT GAGGAAAAAG GTGGCCCTTA CAAAGCATCG ATTTCTTTAG 
    GCCATGCAAC AAATCCTGCA GCAGATGTAC TGGTTGCATA TGAAATGAAT 
    GGTGAGGTGC TCAAGCGTGA TCATGGATAC CCTCTCCGTG TCGTAGTTCC 
    AGGTGTGATT GGTGCTCGTT CAGTCAAATG GTTGGACAGA ATTGACATAA 
    TTGAGGAAGA GTGTCAGGGT TTCTTTATGC AAAAGGATTA CAAAATGTTC 
    CCTCCATCTG TTGATTGGGA CAATATTGTG TGGTCAACCA GGAAGCCCCA 
    AATGGACTAC CCAGTTCAGT CTGCCATATG CTCTTTGGAA GACACAAATG 
    CCATCATTCC AGGAGAAGTG ACTGTCACTG GATATGCGTT GTCAGGAGGC 
    GGCCGAGGTA TTGAGAGGGT GGATATATCC ACTGACGGTG GCAAGACTTG 
    GTTCGGTGCT GTCCGGTACC AAAAGGAAGG TGTACCATAC GTCGCAGGTG 
    ACATAAGTAG TGACAAGTGG GCTTGGGTTC TCTTCAAGAC TGTTATCGAT 
    GTGAAAGGTG ACACGGAGGT TATCGTAAAA GCGGTTGATT CCAGTGCAAA 
    TGTGCAACCT GAGAGCGTGG AGACCATATG GAACCTTAGA GGGATCCTGA 
    ACACCTGCTG GCACCGTGTT CGCCTTCTGA CAATACACAA CCTTAGAAGC 
    CTTTTGTGAT GATCCTACAC ATACACCTAA CTAGTATTAT CTCTTTAAAT 
    TTACCGCTCT ATGTTGCACT GTCGTTCCGC TTTCGGATCT GCATTGGAGA 
    AAAAGAGTCA AGAGGGACCA ATAATATAAT GCTGGCTGAC TTGCTTGGAT 
    GCTGGAATAA AATCCCGTGC CACCTTGTTA TCC

    Gene models with high sequence identity

    1. AT3G01910.1 [+] show detail - sulfite oxidase
      E-value: 4e-166; Score: 581.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Oxidoreductase, molybdopterin-binding domain 6e-79
    Gene3D Moybdenum cofactor oxidoreductase, dimerisation 2.5e-37
    FPrintScan Eukaryotic molybdopterin oxidoreductase 7.3e-55
    FPrintScan Eukaryotic molybdopterin oxidoreductase 7.3e-55
    FPrintScan Eukaryotic molybdopterin oxidoreductase 7.3e-55
    FPrintScan Eukaryotic molybdopterin oxidoreductase 7.3e-55
    FPrintScan Eukaryotic molybdopterin oxidoreductase 7.3e-55
    FPrintScan Eukaryotic molybdopterin oxidoreductase 7.3e-55
    FPrintScan Eukaryotic molybdopterin oxidoreductase 7.3e-55
    FPrintScan Eukaryotic molybdopterin oxidoreductase 7.3e-55
    FPrintScan Eukaryotic molybdopterin oxidoreductase 7.3e-55
    FPrintScan Eukaryotic molybdopterin oxidoreductase 7.3e-55
    FPrintScan Eukaryotic molybdopterin oxidoreductase 7.3e-55
    FPrintScan Eukaryotic molybdopterin oxidoreductase 7.3e-55
    PatternScan Oxidoreductase, molybdopterin binding site 0
    HMMPfam Oxidoreductase, molybdopterin-binding domain 8.6e-52
    HMMPfam Moybdenum cofactor oxidoreductase, dimerisation 5e-34
    superfamily Oxidoreductase, molybdopterin-binding domain 7.4e-75
    superfamily Immunoglobulin E-set 9.1e-36
    HMMPanther SULFITE REDUCTASE 2.2e-143

    See the detailed result >

    AT3G01910.1

    Model type
    Protein coding
    Short Description
    sulfite oxidase
    Curator Summary
    Encodes a homodimeric Mo-enzyme with molybdopterin as organic component of the molybdenum cofactor. It lacks the heme domain that other eukaryotic Mo-enzymes possess and has no redox-active centers other than the molybdenum. SO protein has been found in all parts of the plant. The plant SO combines its enzymatic sulfite oxidation with a subsequent nonenzymatic step using its reaction product H2O2 as intermediate for oxidizing another molecule of sulfite.
    Computational Description
    sulfite oxidase (SOX); FUNCTIONS IN: sulfite oxidase activity; INVOLVED IN: sulfur metabolic process, response to sulfur dioxide, chlorophyll metabolic process; LOCATED IN: mitochondrion, peroxisome; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), Eukaryotic molybdopterin oxidoreductase (InterPro:IPR008335), Moybdenum cofactor oxidoreductase, dimerisation (InterPro:IPR005066), Oxidoreductase, molybdopterin-binding domain (InterPro:IPR000572); BEST Arabidopsis thaliana protein match is: nitrate reductase 1 (TAIR:AT1G77760.1); Has 4198 Blast hits to 4195 proteins in 919 species: Archae - 144; Bacteria - 2268; Metazoa - 143; Fungi - 280; Plants - 245; Viruses - 0; Other Eukaryotes - 1118 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR