K19203

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19203

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19203

Determination of introduced cDNA(s)

  • J023012J01 - Rice Full-length cDNAs - Original: J023012J01

    full reading [+] show sequence

    Nucleotide sequence: J023012J01 - full reading 
    TGACGCGACT ACGCGTACGC CACGCCACAA CGCTTCTCGC TCTCCCTCCA 
    CTCGTAGCAG CTCGAGCTGC CTGTAGCAGA TAGCGCGACG CTGCGACCTT 
    CGTGTGCCCG GCCGCTCGCC GCCCCGCGCG CATAAGAGGG AGGAGGAAGG 
    AAGGAGGAGA GATCGTAGCA AGAGCGAAGC GAGATGGCTG CCGGGCTGGG 
    CGTGAAGGCG GCGCCGTTCA CGTACGTGGC GCACGCGCTG GCCGTGGCGG 
    CGGCGGTCAT GGTGCTCGTC TGGTGCATCA GCTTCCGGGG CGGCCTCGCG 
    TTCGAGGCGG ACAACAAGAA CCTCATCTTC AACGTTCACC CTGTTCTTAT 
    GCTGATTGGG TACATTATCC TCGGCAGTGA AGCCATAATG ATCTACAAGA 
    TATTCCCAAA ACTGAACCAC GACACAACCA AGCTGATCCA CCTGATTCTC 
    CACGCGATCG CCATTGTTCT TGGCGCCGTC GGGATCTACT GCGCCTTCAA 
    GTTCCACAAC GAGAGCGGGA TCGCCAACCT CTACAGCCTG CATTCCTGGC 
    TCGGCATCGG AACAATCTCG CTGTACGGCA TTCAGTGGAT ATTTGGATTC 
    GTGGCGTTCT TCTACCCCGG CGCGGCGCCG CACGTGAGGC GCGGGGCGCT 
    GCCGTGGCAC GTGCTGTTCG GGCTGTTCGT CTACGTCCTG ACGCTGGCGA 
    CGGCGGAGCT CGGGCTCCTG GAGAAGCTGA CCTTCCTCCA GAGCTCCGGC 
    CTCGACAAGT ACGGCGCGGA GGCGTTCCTG GTGAACTTCA CGGGGCTGGT 
    CGTCGCGCTG TTCGGCGCCG CCGTCGTCGT GGCCGCCGTC GCGCCGGCTC 
    ACGTCGAGGA ACCCGAGGGC TATGCTCCAA TTCCGGTCAA CTAGCTATGT 
    TTCGCGGTTG CTGGAAGTGA TCATTAATAC CACGAAATCA AAGGTGTAAC 
    AGCAGAATTC ATATACCGAT TTGTTTGTAT TCGGTGGACG ATACTGTGCG 
    ATAATTCAAC ACTATCCAGG TAATTTACGT TTACTACAGT GAATGC

    Gene models with high sequence identity

    1. AT4G25570.1 [+] show detail - Cytochrome b561/ferric reductase transmembrane protein family
      E-value: 2e-51; Score: 200.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Cytochrom_B561 1e-47
    HMMPanther CYTOCHROME B561 4.2e-83
    ProfileScan Cytochrome b561/ferric reductase transmembrane 47.535
    HMMSmart Cytochrome b561/ferric reductase transmembrane 3.8e-48

    See the detailed result >

    AT4G25570.1

    Model type
    Protein coding
    Short Description
    Cytochrome b561/ferric reductase transmembrane protein family
    Curator Summary
    Encodes cytochrome b561.
    Computational Description
    ACYB-2; FUNCTIONS IN: carbon-monoxide oxygenase activity; LOCATED IN: integral to membrane, chloroplast, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b561, eukaryote (InterPro:IPR004877), Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593); BEST Arabidopsis thaliana protein match is: cytochrome B561-1 (TAIR:AT5G38630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR