K19208

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19208

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small) decreased length (PATO:0000574) (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19208

Determination of introduced cDNA(s)

J013000C07 - Rice Full-length cDNAs - Original: J013000C07

full reading [+] show sequence

GCTCCTTCCT CCGCTCGCCG TCTTCTCGAC GACGACCCGC GGCCACCGCC 
GCGCCGCCCT CCTCGCCGCC GCCGCCGCCG CCGTCTCCGC AGAATCTGAT 
CGATGGCGCC GTCGTCGACG TCGTCGGAGG GTGCCTCCGA CGAGTGGTTG 
CCACCCAGCC GGCGGCCGGA GCTGGCGGAC GTGGTCCCCG TGACGCAGGA 
CGACGGGCCC CACCCCGTGG TGGCCATCGC CTACCGGGAC GAGTTCCGCG 
AGGTCATGGA CTACTTCCGC GCCCTCTACT TCGCCGGCGA GCGCAGCGTC 
CGCGCCCTCC ACCTCACCGC CGAGGTCATC GACCTTAATC CCGGCAACTA 
CACGGTGTGG CATTTTAGGC GTCTTGTTCT AGAGGCACTG GATGCTGATC 
TGCGTGAGGA AATGGATTTT GTGGACCGAA TTGCTGAATG TAACCCAAAA 
AATTATCAAA TCTGGCATCA CAAGAGATGG CTTGCGGAGA AATTAGGACC 
AGATATTGCA AATAAAGAGC ACGAATTTAC AAGGAAGATA CTTTCTATGG 
ATGCTAAAAA TTACCATGCT TGGTCTCATA GGCAGTGGGT TCTTCAAGCA 
CTGGGTGGAT GGGAGACTGA ACTACAGTAT TGCAACCAGC TGCTTGAGGA 
AGACGTCTTC AATAATTCAG CTTGGAATCA GAGATACCTT GTAATAACAA 
GTTCACCACT TCTTGGAGGC CTTGCAGCAA TGCGTGACTC GGAAGTGGAT 
TACACAGTTG GGGCTATTCT GGCTAACCCT CAGAATGAAA GCCCCTGGAG 
ATACCTCAAA GGCCTGTACA AGGGTGAAAA TAACTTGCTG ATGGCTGATG 
AGCGCATCTC TGATGTTTGT CTCAAGGTCC TGAAACATGA TTCGACCTGC 
GTATTTGCTT TGAGCTTGCT GCTCGATCTT CTTCAAATTG GTTTACAACC 
TTCAGATGAA CTCAAAGGAA CTATCGAAGC AATAAAGAAC TCTGATCCTG 
AAGCAGATGA AGCAGTAGAT GCTGATCTTG CGACTGCAAT CTGCTCAATA 
TTGCAGAGAT GTGATCCCCT GCGGATAAAT TACTGGTCCT GGTACAGGAC 
CACTATTTCT TCTCAAACCT GAAGCATGCA GTGGCCTCCA TGAGGTCATA 
ATGGAGATAT CTTCTATCTT CGTGTGATTC TGGGCGTTGA GGTGCCTAGC 
TACATTTGTT ATGAACTTTC CTTGGGCATA ACTGATCACT GATATTACTC 
C

Gene models with high sequence identity

AT3G59380.1 [+] show detail - farnesyltransferase A
E-value: 8e-116; Score: 414.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Protein prenyltransferase, alpha subunit	2.2e-09
HMMPfam	Protein prenyltransferase, alpha subunit	3.3e-11
HMMPfam	Protein prenyltransferase, alpha subunit	6.7e-11
HMMPfam	Protein prenyltransferase, alpha subunit	2.2e-08
HMMPfam	Protein prenyltransferase, alpha subunit	8.1e-05
ProfileScan	Protein prenyltransferase, alpha subunit	15.789
ProfileScan	Protein prenyltransferase, alpha subunit	17.152
ProfileScan	Protein prenyltransferase, alpha subunit	16.984
ProfileScan	Protein prenyltransferase, alpha subunit	13.86
ProfileScan	Protein prenyltransferase, alpha subunit	11.647
Gene3D	Protein prenyltransferase	2.4e-94
HMMPanther	PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT	9.1e-83
HMMPanther	PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB	9.1e-83
superfamily	Protein prenylyltransferase	5.9e-70

See the detailed result >

AT3G59380.1

Model type: Protein coding
Short Description: farnesyltransferase A
Curator Summary: Encodes the alpha-subunit shared between protein farnesyltransferase and protein geranylgeranyltransferase-I. Involved in protein prenylation: covalent attachment of the C-15 isoprene farnesyl or the C-20 isoprene geranylgeranyl groups to the C-terminal end of some proteins. Involved in shoot and flower meristem homeostasis, and response to ABA and drought. Also regulates leaf cell shape. Mutant is epistatic to era1.
Computational Description: farnesyltransferase A (FTA); CONTAINS InterPro DOMAIN/s: Protein prenyltransferase (InterPro:IPR008940), Protein prenyltransferase, alpha subunit (InterPro:IPR002088); BEST Arabidopsis thaliana protein match is: RAB geranylgeranyl transferase alpha subunit 1 (TAIR:AT4G24490.2); Has 1351 Blast hits to 1070 proteins in 249 species: Archae - 32; Bacteria - 58; Metazoa - 584; Fungi - 296; Plants - 191; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink).
Link: InterPro Scan - TAIR