K19208

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19208

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19208

Determination of introduced cDNA(s)

  • J013000C07 - Rice Full-length cDNAs - Original: J013000C07

    full reading [+] show sequence

    Nucleotide sequence: J013000C07 - full reading 
    GCTCCTTCCT CCGCTCGCCG TCTTCTCGAC GACGACCCGC GGCCACCGCC 
    GCGCCGCCCT CCTCGCCGCC GCCGCCGCCG CCGTCTCCGC AGAATCTGAT 
    CGATGGCGCC GTCGTCGACG TCGTCGGAGG GTGCCTCCGA CGAGTGGTTG 
    CCACCCAGCC GGCGGCCGGA GCTGGCGGAC GTGGTCCCCG TGACGCAGGA 
    CGACGGGCCC CACCCCGTGG TGGCCATCGC CTACCGGGAC GAGTTCCGCG 
    AGGTCATGGA CTACTTCCGC GCCCTCTACT TCGCCGGCGA GCGCAGCGTC 
    CGCGCCCTCC ACCTCACCGC CGAGGTCATC GACCTTAATC CCGGCAACTA 
    CACGGTGTGG CATTTTAGGC GTCTTGTTCT AGAGGCACTG GATGCTGATC 
    TGCGTGAGGA AATGGATTTT GTGGACCGAA TTGCTGAATG TAACCCAAAA 
    AATTATCAAA TCTGGCATCA CAAGAGATGG CTTGCGGAGA AATTAGGACC 
    AGATATTGCA AATAAAGAGC ACGAATTTAC AAGGAAGATA CTTTCTATGG 
    ATGCTAAAAA TTACCATGCT TGGTCTCATA GGCAGTGGGT TCTTCAAGCA 
    CTGGGTGGAT GGGAGACTGA ACTACAGTAT TGCAACCAGC TGCTTGAGGA 
    AGACGTCTTC AATAATTCAG CTTGGAATCA GAGATACCTT GTAATAACAA 
    GTTCACCACT TCTTGGAGGC CTTGCAGCAA TGCGTGACTC GGAAGTGGAT 
    TACACAGTTG GGGCTATTCT GGCTAACCCT CAGAATGAAA GCCCCTGGAG 
    ATACCTCAAA GGCCTGTACA AGGGTGAAAA TAACTTGCTG ATGGCTGATG 
    AGCGCATCTC TGATGTTTGT CTCAAGGTCC TGAAACATGA TTCGACCTGC 
    GTATTTGCTT TGAGCTTGCT GCTCGATCTT CTTCAAATTG GTTTACAACC 
    TTCAGATGAA CTCAAAGGAA CTATCGAAGC AATAAAGAAC TCTGATCCTG 
    AAGCAGATGA AGCAGTAGAT GCTGATCTTG CGACTGCAAT CTGCTCAATA 
    TTGCAGAGAT GTGATCCCCT GCGGATAAAT TACTGGTCCT GGTACAGGAC 
    CACTATTTCT TCTCAAACCT GAAGCATGCA GTGGCCTCCA TGAGGTCATA 
    ATGGAGATAT CTTCTATCTT CGTGTGATTC TGGGCGTTGA GGTGCCTAGC 
    TACATTTGTT ATGAACTTTC CTTGGGCATA ACTGATCACT GATATTACTC 
    C

    Gene models with high sequence identity

    1. AT3G59380.1 [+] show detail - farnesyltransferase A
      E-value: 8e-116; Score: 414.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein prenyltransferase, alpha subunit 0.0000000022
    HMMPfam Protein prenyltransferase, alpha subunit 0.000000000033
    HMMPfam Protein prenyltransferase, alpha subunit 0.000000000067
    HMMPfam Protein prenyltransferase, alpha subunit 0.000000022
    HMMPfam Protein prenyltransferase, alpha subunit 0.000081
    ProfileScan Protein prenyltransferase, alpha subunit 15.789
    ProfileScan Protein prenyltransferase, alpha subunit 17.152
    ProfileScan Protein prenyltransferase, alpha subunit 16.984
    ProfileScan Protein prenyltransferase, alpha subunit 13.86
    ProfileScan Protein prenyltransferase, alpha subunit 11.647
    Gene3D Protein prenyltransferase 2.4e-94
    HMMPanther PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT 9.1e-83
    HMMPanther PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB 9.1e-83
    superfamily Protein prenylyltransferase 5.9e-70

    See the detailed result >

    AT3G59380.1

    Model type
    Protein coding
    Short Description
    farnesyltransferase A
    Curator Summary
    Encodes the alpha-subunit shared between protein farnesyltransferase and protein geranylgeranyltransferase-I. Involved in protein prenylation: covalent attachment of the C-15 isoprene farnesyl or the C-20 isoprene geranylgeranyl groups to the C-terminal end of some proteins. Involved in shoot and flower meristem homeostasis, and response to ABA and drought. Also regulates leaf cell shape. Mutant is epistatic to era1.
    Computational Description
    farnesyltransferase A (FTA); CONTAINS InterPro DOMAIN/s: Protein prenyltransferase (InterPro:IPR008940), Protein prenyltransferase, alpha subunit (InterPro:IPR002088); BEST Arabidopsis thaliana protein match is: RAB geranylgeranyl transferase alpha subunit 1 (TAIR:AT4G24490.2); Has 1351 Blast hits to 1070 proteins in 249 species: Archae - 32; Bacteria - 58; Metazoa - 584; Fungi - 296; Plants - 191; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR