K19217

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19217

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19217

Determination of introduced cDNA(s)

J023039G14 - Rice Full-length cDNAs - Original: J023039G14

full reading [+] show sequence

CTCTCTGCTC CTGCTCATCA TCTTCTTCTT CTCCGCTCTC CCTAATCCAA 
AAAAAGGCGG CTGCTTTGGT CGCTCGCTCG CTCGCGCGGA CGTTGGAGGA 
GAAGCAGCTA CCGGGATGGA CGCCATGGCC GTGCTCGCGA GGACCTCCCG 
CCCCGCCCCG ACCCTCCTCG CCGCGACCTC CCCCGCGGTG TCCCGGCGCC 
CGGCGGCCGT CTCCTTCGCC GCCGCCGCCT CCCCGGGGTC CCGCGGCCGC 
GTCGCGCTGA GCGCCGCGTG GGGCGGGAGG GCGGCCAGGG GGCGCGTCTC 
CGCCGCCGGC CGCATCGTCG CGTCGTCGGT TGAGCAATCC TATATTATGA 
TCAAGCCTGA TGGTGTTCAG CGAGGCCTGG TTGGCGAGAT TATTTCCCGT 
TTCGAGAAGA AAGGCTTTGT GTTGAAGGGC TTAAAGCTTT TTCAGTGCCC 
CAAGGACTTG GCACAGGAGC ACTACAAGGA TTTGAAGGAA AAACCTTTCT 
TTCCCGGTCT GATCGAGTAC ATAACTTCTG GCCCTGTTGT TTGCATGGCT 
TGGGAGGGGA ATGGTGTTGT TGCATCAGCT CGCAAGTTAA TAGGAGCTAC 
TAATCCCCTT CAAGCTGAAC CAGGGACCAT ACGGGGCGAT CTTGCAGTTC 
AAACAGGAAG GAATGTTGTC CATGGAAGTG ACAGTCCTGA TAACGGCAAG 
CGTGAAATCG CTCTATGGTT CAAAGAAGGC GAACTCTGCG AATGGGAATC 
TGTTCTGACA CCATGGCTTG TAGAGTAATG CTCCCAGATC AGTGCAAGAA 
CTGGATGCAG TGCTTGTTCT TGATTTGAGG GGTTATGTAT GAGTTCAGAT 
CAGCAGAGTA AAGTAGCTTA TACCAAAGCT CGGCCTTCTC ATGACTGTAC 
ACCCTGACAT TCCCCTTTTT TGTAATACCC AACATTCCCT TTTTTGCGTT 
TGACCGATTA CTCTCTGTTG TCAAATCTCC TGGCATGTCT GTAATTGGTT 
CAGAACAATA CCAGCAAAGC TCCAACTTCC AAGTCATTAT GCAGATGAAT 
GCGTTCAAAA TTATCTCAGG CAGTTGACCG ATGACTGATT GTCACTGTTG 
TACTATAGCT CCCAGCAGAG GTGAACTCGT GCAGAGTTGC AGAGTTCATT 
TGGCTGATGA GCCATATCTT GATCAGCAGT TATGAAATTG TCACCGTATT 
GGTGTTCAAC CCACAAATGA GGAGGCTAAG GGATACTCGT TTGACC

Gene models with high sequence identity

AT5G63310.1 [+] show detail - nucleoside diphosphate kinase 2
E-value: 2e-64; Score: 243.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Nucleoside diphosphate kinase, core	1e-53
superfamily	Nucleoside diphosphate kinase, core	7.1e-58
PatternScan	Nucleoside diphosphate kinase, core	0
Gene3D	Nucleoside diphosphate kinase, core	3.9e-56
FPrintScan	Nucleoside diphosphate kinase, core	2.7e-52
FPrintScan	Nucleoside diphosphate kinase, core	2.7e-52
FPrintScan	Nucleoside diphosphate kinase, core	2.7e-52
FPrintScan	Nucleoside diphosphate kinase, core	2.7e-52
FPrintScan	Nucleoside diphosphate kinase, core	2.7e-52
HAMAP	Nucleoside diphosphate kinase, core	33.732
HMMPanther	Nucleoside diphosphate kinase, core	4.2e-32
HMMSmart	Nucleoside diphosphate kinase, core	1.9e-87

See the detailed result >

AT5G63310.1

Model type: Protein coding
Short Description: nucleoside diphosphate kinase 2
Curator Summary: Maintains intracellular dNTP levels except ATP. Plays a role in response to oxidative stress and UV. Involved in phytochrome-mediated light signaling. Participates in auxin-regulated processes, partly through the modulation of auxin transport. H-bonding with His-197 inside the nucleotide-binding pocket is critical for NDPK2 functioning.
Computational Description: nucleoside diphosphate kinase 2 (NDPK2); FUNCTIONS IN: nucleoside diphosphate kinase activity, protein binding, ATP binding; INVOLVED IN: response to UV, auxin mediated signaling pathway, response to hydrogen peroxide, red, far-red light phototransduction; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside diphosphate kinase, core (InterPro:IPR001564); BEST Arabidopsis thaliana protein match is: Nucleoside diphosphate kinase family protein (TAIR:AT4G09320.1); Has 9088 Blast hits to 8922 proteins in 2598 species: Archae - 291; Bacteria - 4641; Metazoa - 1094; Fungi - 170; Plants - 375; Viruses - 117; Other Eukaryotes - 2400 (source: NCBI BLink).
Link: InterPro Scan - TAIR