K19221

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19221

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19221

Determination of introduced cDNA(s)

  • J033058D04 - Rice Full-length cDNAs - Original: J033058D04

    full reading [+] show sequence

    Nucleotide sequence: J033058D04 - full reading
    GACCACCTCA CTCACTCCCT AAAACCCTCC TCCCTCCCCC ATCATCTCCC 
    TCCTCCCACT CGCCGCCGCC GCCGCCAACT TTCCCCACCA CCACCACCCA
    TGGCGGCCAC CACCCACGCC GCCTCCCTCT CCTTCCTCCT CTCTCACCCC
    CACCCCACCT CCCCCAACCC TAACCCTAAC CCTAACCTCC CCCTCCGCCG
    CGCCCCCCAC CGCGTCCGCT GCGCCACCGA CGCCGCCGCC ACCAGGCACC
    GGCGCGCGGC CGACGAGAAC ATCCGGGAGG AGGCGGCGAG GCACCGCGCC
    CCGAACCACA ACTTCTCCGC GTGGTACGCG CCCTTCCCGC CCGCCCCCAA
    CGGCGACCCC GACGAGCGCT ACTCCCTGGA CGAGATCGTC TACCGCTCCA
    GCTCGGGCGG CCTCCTCGAC GTGCGCCACG ACATGGACGC GCTCGCCCGC
    TTCCCGGGCT CCTACTGGCG CGACCTCTTC GACTCCCGCG TCGGCCGCAC
    CACCTGGCCC TTCGGCTCCG GCGTCTGGTC CAAGAATGAG TTCGTCCTCC
    CCGAGATCGA CCCCGACCAC ATCGTCTCCC TCTTCGAGGG CAACTCCAAC
    CTCTTCTGGG CGGAGCGCCT CGGCCGCGAC CACCTCGCCG GGATGAACGA
    CCTCTGGGTC AAGCACTGCG GCATCTCCCA CACCGGATCG TTCAAGGATC
    TCGGCATGAC GGTGCTCGTC AGCCAGGTGA ACCGCCTCCG CCGCGCGCCG
    CTCTCCCGCC CCATCGCCGG AGTCGGGTGC GCCTCCACGG GGGACACCTC
    CGCCGCGCTC TCGGCCTACT GCGCCGCCGC GGGGATCCCG GCCATTGTGT
    TCCTCCCCGC CAACCGCATC TCGCTCGAGC AGCTCATCCA GCCCATTGCC
    AATGGCGCCA CCGTGCTCTC GCTCGACACG GACTTCGACG GCTGCATGCG
    GCTCATCAGG GAGGTGACTG CCGAGCTGCC GATTTACCTT GCGAATTCAT
    TGAATTCCCT TCGGCTCGAG GGGCAGAAGA CTGCTGCTAT TGAGATTCTT
    CAGCAGTTCG ATTGGGAGGT GCCGGATTGG GTCATTGTTC CCGGAGGCAA
    TCTTGGGAAC ATATATGCCT TCTACAAGGG ATTCGAGATG TGCCGCGTCC
    TTGGGCTCGT CGATCGTGTG CCGCGGCTTG TCTGCGCGCA GGCTGCCAAT
    GCGAACCCGC TGTACCGGTA CTACAAGTCG GGGTGGACTG AGTTCACGCC
    GCAGGTGGCT GAGCCGACAT TTGCATCGGC AATTCAGATT GGTGACCCGG
    TATCTGTCGA TCGCGCGGTG GTTGCGCTCA AGGCAACTGA TGGCATCGTC
    GAGGAGGCCA CGGAGGAGGA ACTCATGAAC GCAATGTCGC TCGCTGATCG
    CACTGGCATG TTTGCTTGCC CGCATACTGG GGTTGCCCTC GCAGCACTGT
    TCAAGCTCCG TGACCAGCGC ATCATCGGGC CAAATGACCG CACGGTAGTC
    GTCAGCACAG CTCATGGTCT GAAGTTCTCA CAGTCCAAGA TCGACTACCA
    TGACAGCAAG ATCGAAGACA TGGCCTGCAA GTATGCGAAT CCCCCGGTCA
    GCGTGAAGGC TGACTTCGGT GCCGTCATGG ATGTCCTCAA GAAGAGGCTC
    AAGGGTAAGC TCTGAAGTGT GTTTGGCTAA CTCCCCTCCA ATCAATTGCT
    GTATGTCAGT TGTCTTCTGC ATCAAATTCG AATGCGGCGG GTGACTGTGG
    AGCGATGATT CGTCGATTTG TAGTAGTATT GTAGGTCCCT GAACCTTGAA
    GATCGTCCAT GCTTGAGAGT AAAGATTGAG AGGCTATCTC TTGTACCTGT
    TCTGTGTTGT GTGTGGGTGG GTAATAAGCG ACTACCTTGT TGTTTGAAAC
    TCTGAATAAT CAGATCATCT AGTCCAATTA CTCCGTTC

    Gene models with high sequence identity

    1. AT4G29840.1 [+] show detail - Pyridoxal-5'-phosphate-dependent enzyme family protein
      E-value: 0; Score: 717.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan PRICHEXTENSN 0.00000000018
    FPrintScan PRICHEXTENSN 0.00000000018
    FPrintScan PRICHEXTENSN 0.00000000018
    FPrintScan PRICHEXTENSN 0.00000000018
    FPrintScan PRICHEXTENSN 0.00000000018
    HMMPfam Pyridoxal phosphate-dependent enzyme, beta subunit 5e-52
    superfamily Pyridoxal phosphate-dependent enzyme, beta subunit 2.7e-113
    HMMTigr Threonine synthase 4.3e-74
    HMMPanther THREONINE SYNTHASE 2e-139
    HMMPanther SER/THR DEHYDRATASE, TRP SYNTHASE 2e-139
    PatternScan Serine/threonine dehydratase, pyridoxal-phosphate-binding site 0
    Gene3D no description 1.2e-54

    See the detailed result >

    AT4G29840.1

    Model type
    Protein coding
    Short Description
    Pyridoxal-5'-phosphate-dependent enzyme family protein
    Curator Summary
    threonine synthase
    Computational Description
    METHIONINE OVER-ACCUMULATOR 2 (MTO2); FUNCTIONS IN: threonine synthase activity; INVOLVED IN: threonine biosynthetic process, metabolic process, cellular amino acid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Threonine synthase (InterPro:IPR004450), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Serine/threonine dehydratase, pyridoxal-phosphate-binding site (InterPro:IPR000634); BEST Arabidopsis thaliana protein match is: Pyridoxal-5'-phosphate-dependent enzyme family protein (TAIR:AT1G72810.1); Has 6824 Blast hits to 6824 proteins in 2025 species: Archae - 409; Bacteria - 4266; Metazoa - 101; Fungi - 24; Plants - 83; Viruses - 0; Other Eukaryotes - 1941 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR