K19228

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19228

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • increased size (PATO:0000586)
    (Cauline leaf::Shape::large)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19228

Determination of introduced cDNA(s)

  • J023050G22 - Rice Full-length cDNAs - Original: J023050G22

    full reading [+] show sequence

    Nucleotide sequence: J023050G22 - full reading 
    GACTTGTGCT CGGGGAAGTT CGATCGATCC CTCACCATGG CGTCGGAGAA 
    GGAGGCGGCG CTCGCCGCCG TGCCCAACGA CAACCCCACC ATATTTGACA 
    AGATCATCAA GAAGGAAATA CCTTCCACTG TGGTATTTGA CGATGAGAAG 
    GTTCTGGCTT TCAGAGACAT AAATCCTCAA GCTCCGACCC ACATTGTGAT 
    CATTCCCAAA GTGAAGGATG GATTAACTGG CCTATCAAAG GCAGAAGAGA 
    GGCATGTAGA AATACTCGGT TACCTCCTCT ATGTTGCCAA AGTTGTTGCA 
    AAGCAGGAGG GACTTGAAGA TGGCTACCGT ATTGTCATCA ATGATGGCCC 
    CAGTGGATGC CAATCTGTTT ACCACATACA TGTACATCTC CTCGGAGGCA 
    GGCAGATGAA CTGGCCGCCG GGCTAACGAG TGCCCGTCTG TTGAACTGCC 
    TTCATGGCAA GGATGTCACA CTGCCTCTCC GTTGAATAAT TCCTGTAACT 
    GGCATAACAA TTGGTGCCCT GAACTTATGC TATATGTTTG TGGATGTTAC 
    CAGGACAGGA CATGACCATC CTGCTATGAT TTATGGACAA GATACATTGC 
    GTTCTCACTA GTTATTACTG CTTTTTTTTT CCATGTTGAA TACTTGCTGT 
    TGCCTGCATT GCTTCTGCAT GATGCGTCTG TATTTCAAGA GCAGTGCAGT 
    GAAAGATGAT CTTCAGATGG AGTTG

    Gene models with high sequence identity

    1. AT3G56490.1 [+] show detail - HIS triad family protein 3
      E-value: 8e-61; Score: 230.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Histidine triad (HIT) protein 3.3e-31
    ProfileScan Histidine triad (HIT) protein 15.058
    HMMPfam Histidine triad (HIT) protein 4.7e-28
    FPrintScan Histidine triad (HIT) protein 6.1e-20
    FPrintScan Histidine triad (HIT) protein 6.1e-20
    FPrintScan Histidine triad (HIT) protein 6.1e-20
    superfamily Histidine triad-like motif 2.8e-32
    PatternScan Histidine triad, conserved site 0
    Gene3D Histidine triad motif 3.5e-35

    See the detailed result >

    AT3G56490.1

    Model type
    Protein coding
    Short Description
    HIS triad family protein 3
    Curator Summary
    Encodes a protein that has adenylylsulfate sulfohydrolase activity (E.C. 3.6.2.1) in vitro.
    Computational Description
    HIS triad family protein 3 (HIT3); FUNCTIONS IN: protein kinase C binding, adenylylsulfatase activity, zinc ion binding; INVOLVED IN: sulfur metabolic process, purine ribonucleotide metabolic process; LOCATED IN: peroxisome, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histidine triad-like motif (InterPro:IPR011146), Histidine triad, conserved site (InterPro:IPR019808), Histidine triad (HIT) protein (InterPro:IPR001310), Histidine triad motif (InterPro:IPR011151); BEST Arabidopsis thaliana protein match is: HISTIDINE TRIAD NUCLEOTIDE-BINDING 2 (TAIR:AT1G31160.1); Has 7957 Blast hits to 7956 proteins in 2592 species: Archae - 148; Bacteria - 4849; Metazoa - 343; Fungi - 139; Plants - 127; Viruses - 0; Other Eukaryotes - 2351 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR