K19240

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19240

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
flower (PO:0009046)
  • abnormal (PATO:0000460)
    (Flower::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19240

Determination of introduced cDNA(s)

  • J033066K01 - Rice Full-length cDNAs - Original: J033066K01

    full reading [+] show sequence

    Nucleotide sequence: J033066K01 - full reading
    GGGGATGCCT CGCCGCCGCT TCTAGGTCTT CTTCTCGGTG ACCGGCGAGG 
    CAGCCGGCGC GGCTTTGCCG GCGAGGGCTA TAGGTTGCCG GCACGTGCGA
    CCTGCTCCGT AGCGAGCGCA CGGGGGGCTG CCGTGACTGA GCAGCCGCAC
    CGCGCGGCAA TTAATGCTTC GTGCCTCCCA GTGAGCTGCC TTGATCGGCT
    GACACCCTCT CCGCAGCTTC ACCCGAGATG GAGGATCTCC CCATGGGGCG
    GCGGAACCCG GCGGCCAGCC TCACCGACGA CCTCGTCGTC GAGATCCTCC
    GCCGCCTCCC CGTCCGCTCC GTGTGCCGCT TCAAGCGCGT CTGCCGGTCC
    TGGCGCAACC TCATCGCCGA CCGTGAGCAC CGCAAGAAGC TGCCGCAGAC
    GCTGTCCGGC TTCTTCTACA AAAGCATCAG CGGCGAGCGC TGCCCTTGCT
    CGGCGCACCA CTTCACCAAC GTCTCCGGGA AAGGGGTGCC TCTCATCTAC
    CCGTCATTCT CCTTCCTGCC CCAGTGCGAC ACGGTCGTCC CCTTGGACTG
    CTGCAATGGC CTCCTCCTCT GCCGCTGCTT CCAGCCCGGG CCTAACAACA
    GCGATGATGA GATTGAGCCG TTCCATTATG CCGTGTGCAA TCCTGCGACC
    AAGGAATGGG TGATGTTGCC GGATGCCGAC TGGGCTAATG GCGAGACCCG
    CATTGCCTGC CTGTGTTTCG ACCCAGCAAT CTCCTCGCAT TTCCATGTTC
    TTGAGTATGT GGAGGCTGAA TATGAAGATG TCACGGGGGT TGAGATCTAC
    TCTTCCGAAA CTGGGTTGTG GACTCTTCAT GTGAGTGGAT GGGGCGATGA
    TGTGTTTCTA AGGCATTGGG CCAATCCGAG AAGTGTTTTC CTTAATGGTT
    TTCTGCATTC TGCTACGTGT GCTGCTGAGA TTGCGGTGGT TGACATGGAG
    GGGAAGAAAT GGAGGACCAT TGCTATGCCG GAGCCTGAAG GTGATACTGG
    CATAATTCAT CAAACTCAGG GTCGCCTATG TGCTTTTAAT GTTGATCCAG
    ATGACATCTT CAAACTGTCA ATTTGGATTC TTGAAGATTA TGATACAGAT
    AATTGGATAT TAAAGCACAC CGTTAGCTCC TTGAGGCTGT TTGGAGGGAA
    GAAATATCAG TTTGGATTTG ACTACCAAAT AATTGTGGTT CATCCAGAAT
    GTAATTTGAT ATTCTTTGTT TATGGATGGG ACAAAACGTT GATGGCATAT
    GAAATGGATC GCAAGGAAGT GCGTGTTATA CGCAATCTTG GACATGACTC
    CTCGGATCCA TATCTACCGT ATGTTCCACT CTTTTATGAG TCATTTGCAG
    ATGGGCGCTA ACATGCAGAG CGTCGGCTCC ACTTTTACTA CTGCGAAAAC
    ATCCTTTTGC ACTAGGAGAA CCAAGCTTAG AGTGGGCAGA AAGCCATTCT
    CTAGTACAAG GATTTAGCAA GGTCTGTTTT ATTGTACTTG AATTAAGAAG
    TCAGATGGTA GTACTAGTAC TATGTAGATT GTCTTTTGGA AGGTTTGTCC
    TGTTACTCTG AAGGTTGTCT TGTTTTATTC TACTGGTGTT TACCCTATTA
    TAGTGAAGCT TTGATGTGAT ATGCTAACAC TGAAAGGTCT TTTGACTGTA
    TCAGCACAAT CTGTTTAGGG TACTGTGACA GTGTGACTAA TGTTTTGAAT
    GTTGGAGC

    Gene models with high sequence identity

    1. AT5G07610.1 [+] show detail - F-box family protein
      E-value: 0.00000000000005; Score: 76.60

     

    InterPro Scan Digest

    Program Description E-value
    superfamily F-box domain, Skp2-like 7e-17
    ProfileScan F-box domain, cyclin-like 9.312
    HMMTigr F-box associated interaction domain 0.000012
    Gene3D no description 0.00036
    HMMSmart F-box domain, cyclin-like 0.000000058
    HMMPfam F-box domain, cyclin-like 0.000000052

    See the detailed result >

    AT5G07610.1

    Model type
    Protein coding
    Short Description
    F-box family protein
    Computational Description
    F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G49610.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR