K19240

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19240

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
flower (PO:0009046)
  • abnormal (PATO:0000460)
    (Flower::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19240

Determination of introduced cDNA(s)

  • J033066K01 - Rice Full-length cDNAs - Original: J033066K01

    full reading [+] show sequence

    Nucleotide sequence: J033066K01 - full reading 
    GGGGATGCCT CGCCGCCGCT TCTAGGTCTT CTTCTCGGTG ACCGGCGAGG 
    CAGCCGGCGC GGCTTTGCCG GCGAGGGCTA TAGGTTGCCG GCACGTGCGA 
    CCTGCTCCGT AGCGAGCGCA CGGGGGGCTG CCGTGACTGA GCAGCCGCAC 
    CGCGCGGCAA TTAATGCTTC GTGCCTCCCA GTGAGCTGCC TTGATCGGCT 
    GACACCCTCT CCGCAGCTTC ACCCGAGATG GAGGATCTCC CCATGGGGCG 
    GCGGAACCCG GCGGCCAGCC TCACCGACGA CCTCGTCGTC GAGATCCTCC 
    GCCGCCTCCC CGTCCGCTCC GTGTGCCGCT TCAAGCGCGT CTGCCGGTCC 
    TGGCGCAACC TCATCGCCGA CCGTGAGCAC CGCAAGAAGC TGCCGCAGAC 
    GCTGTCCGGC TTCTTCTACA AAAGCATCAG CGGCGAGCGC TGCCCTTGCT 
    CGGCGCACCA CTTCACCAAC GTCTCCGGGA AAGGGGTGCC TCTCATCTAC 
    CCGTCATTCT CCTTCCTGCC CCAGTGCGAC ACGGTCGTCC CCTTGGACTG 
    CTGCAATGGC CTCCTCCTCT GCCGCTGCTT CCAGCCCGGG CCTAACAACA 
    GCGATGATGA GATTGAGCCG TTCCATTATG CCGTGTGCAA TCCTGCGACC 
    AAGGAATGGG TGATGTTGCC GGATGCCGAC TGGGCTAATG GCGAGACCCG 
    CATTGCCTGC CTGTGTTTCG ACCCAGCAAT CTCCTCGCAT TTCCATGTTC 
    TTGAGTATGT GGAGGCTGAA TATGAAGATG TCACGGGGGT TGAGATCTAC 
    TCTTCCGAAA CTGGGTTGTG GACTCTTCAT GTGAGTGGAT GGGGCGATGA 
    TGTGTTTCTA AGGCATTGGG CCAATCCGAG AAGTGTTTTC CTTAATGGTT 
    TTCTGCATTC TGCTACGTGT GCTGCTGAGA TTGCGGTGGT TGACATGGAG 
    GGGAAGAAAT GGAGGACCAT TGCTATGCCG GAGCCTGAAG GTGATACTGG 
    CATAATTCAT CAAACTCAGG GTCGCCTATG TGCTTTTAAT GTTGATCCAG 
    ATGACATCTT CAAACTGTCA ATTTGGATTC TTGAAGATTA TGATACAGAT 
    AATTGGATAT TAAAGCACAC CGTTAGCTCC TTGAGGCTGT TTGGAGGGAA 
    GAAATATCAG TTTGGATTTG ACTACCAAAT AATTGTGGTT CATCCAGAAT 
    GTAATTTGAT ATTCTTTGTT TATGGATGGG ACAAAACGTT GATGGCATAT 
    GAAATGGATC GCAAGGAAGT GCGTGTTATA CGCAATCTTG GACATGACTC 
    CTCGGATCCA TATCTACCGT ATGTTCCACT CTTTTATGAG TCATTTGCAG 
    ATGGGCGCTA ACATGCAGAG CGTCGGCTCC ACTTTTACTA CTGCGAAAAC 
    ATCCTTTTGC ACTAGGAGAA CCAAGCTTAG AGTGGGCAGA AAGCCATTCT 
    CTAGTACAAG GATTTAGCAA GGTCTGTTTT ATTGTACTTG AATTAAGAAG 
    TCAGATGGTA GTACTAGTAC TATGTAGATT GTCTTTTGGA AGGTTTGTCC 
    TGTTACTCTG AAGGTTGTCT TGTTTTATTC TACTGGTGTT TACCCTATTA 
    TAGTGAAGCT TTGATGTGAT ATGCTAACAC TGAAAGGTCT TTTGACTGTA 
    TCAGCACAAT CTGTTTAGGG TACTGTGACA GTGTGACTAA TGTTTTGAAT 
    GTTGGAGC

    Gene models with high sequence identity

    1. AT5G07610.1 [+] show detail - F-box family protein
      E-value: 5e-14; Score: 76.60

     

    InterPro Scan Digest

    Program Description E-value
    superfamily F-box domain, Skp2-like 7e-17
    ProfileScan F-box domain, cyclin-like 9.312
    HMMTigr F-box associated interaction domain 1.2e-05
    Gene3D no description 0.00036
    HMMSmart F-box domain, cyclin-like 5.8e-08
    HMMPfam F-box domain, cyclin-like 5.2e-08

    See the detailed result >

    AT5G07610.1

    Model type
    Protein coding
    Short Description
    F-box family protein
    Computational Description
    F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G49610.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR