K19241

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19241

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19241

Determination of introduced cDNA(s)

  • J023128E10 - Rice Full-length cDNAs - Original: J023128E10

    full reading [+] show sequence

    Nucleotide sequence: J023128E10 - full reading 
    GGGTGGCGAT CTGCGATGGT CGTCTCGTCC GCGACACCCC GGCCCCAATT 
    CCAACACGCG TGCCCAGCAG CCGCAGATCT CTCTCCAAAT TCCCCAATCC 
    AAATCCGCCC TCGCCTCGCC CCGATCGATC CCCTCGATTC GATTCGATCC 
    CGCCCGATGC GAGTGGAGGC GGCGGCGGCG GCGGCGGAGG CCGTGGCGGC 
    GTGCGCGCGA GCTTAGGGTT TCTAGGGTTT GCGCTAGGGT TTGGGGGCGC 
    GCCCGCGATG GGCCGGTCTC GCGGGGTGCC CAATTCCGGC GACGATGAAA 
    CGAACCACAG GTCGAAGCGG AGGAGGGTCG CGTCGAGCGG CGATGCGCCG 
    GACTCGCTCT CGGCGGCCTG CGGGGGAGCC GGAGAGGGTG GTGGGAAGAA 
    GGCGCTGTAC CACTGCAACT ACTGCAATAA GGATATTTCC GGGAAGATCC 
    GGATCAAGTG CTCCAAGTGC CCCGACTTCG ACCTCTGCGT CGAGTGCTTC 
    TCGGTCGGCG CCGAGGTCAC CCCGCACCGC AGCAACCATC CTTACAGGGT 
    CATGGACAAC CTGTCTTTCC CTCTTATTTG TCCAGATTGG AATGCAGACG 
    AGGAAATCCT TCTTCTAGAG GGAATTGAAA TGTATGGTCT GGGAAATTGG 
    GCTGAAGTTG CGGAGCATGT TGGCACCAAG ACCAAGGCAC AATGCATTGA 
    TCATTATACA ACTGCATACA TGAACTCACC TTGTTATCCC CTTCCGGATA 
    TGTCTCATGT TAACGGTAAG AACAGGAAGG AATTGCTTGC TATGGCTAAA 
    GTACAAGGCG AGAGTAAAAA AGTGTTACCA GGGGATTTGA CCCCTAAGGA 
    CGAGTCTCCA TTTTCTCCCC CAAGGGTCAA GGTGGAAGAT GCACTTGGAG 
    AAGGTTTAGC TGGTCGATCA CCTTCACACA TAGCTGGGGG TGCAAATAAG 
    AAAGCATCAA ATGTTGGACA ATTCAAAGAT GGTGCTAATG TAGCAAAAGT 
    TGAAGATGGT CATGTGGATA GAAGTATAGG TGTGAAAAAA CCCCGATATT 
    CTGCAGATGA AGGGCCTTCT TTGACTGAAC TGAGTGGATA CAATTCAAAG 
    AGACATGAAT TTGACCCAGA GTATGATAAC GATGCTGAAC AGGCACTCGC 
    TGAGATGGAG TTTAAAGAAA CTGATTCGGA AACTGATCGT GAACTGAAGC 
    TAAGGGTATT GCGTATTTAC TTGTCAAGGC TTGATGAAAG AAAAAGGAGA 
    AAAGAGTTCA TACTGGAAAG AAACTTACTA TTTCCTAATC CTTTGGAGAA 
    GGATCTCACA AATGAAGACA AGGAAGTTTA CCATCGCTAT AAGGTGTTCA 
    TGCGTTTCCT TTCTAAGGAG GAACATGAAG CACTTGTTAG GAGTGTTCTT 
    GAGGAACGGA AAATTCGAAG GAGGATTCAA GAGCTTCAGG AATGTCGTTC 
    TGCTGGATGC CGTACATTGG CTGAAGCAAA GATTCACATA GAGCAAAAGA 
    GGAAAAAGGA ACATGAGGTG AATGCCCAAA AAGCTAAGGA AAGTGGTCAG 
    CTCTTATCCA ACACTAAAGT GGTGCATAAG ACGAATCGAC CTATGAAAAT 
    CGAGTCAGAT GGTAATTTGG ATCAGAAGAA AGGTGGTGCC AGCTTGGATT 
    CTACTGGCAG GGATTCTCCA AAAACCACAG GGCATGCAGG CACTAAACAT 
    TGGGATGACT GGGATATTGT TGGTTTTCCT GGGGCAGAGC TATTAAGCAC 
    CAGTGAAAAA AATCTATGCT GTCAGAACAG ATTGCTACCC AACCATTACC 
    TGAAAATGCA GGAGGTTTTG ATGCAGGAAA TATTCAAGGG TAGTGTCGCC 
    AAGAAGGAAG ATGCCCATGT ATTATTTAAG GTTGACCCTG CCAAAGTAGA 
    TAACGTTTAT GATATGGTGA CGAAAAAGTT GGGTACCAAT GAGGAGGCCC 
    CGACTGTTTA GCCATGTTTT TGAGTTCCTC AATCAGCGCG TGGTTTCTGA 
    TTTGCAGCAT GACTACTGAG ACAGCTAAAA TGGAGGCTAT ACTTGAATTA 
    AATTGGCTGT AGTTGAAATT TGTGTGAGGT GTCTGAAGAA GCACAATAAG 
    GCATTTCAGC CAAATTGTAA AATTATCGCC CCGATTGGAA TGTGTAGCAT 
    GAGTTTACCA TACCATTACT CTCCATTTTA AGAGGATGGT TTGCCCTCGT 
    TCGAAGTGTA ACGTGTAACG TGTTGCAGAG CCACTAAAAG GGCCTTGACA 
    GTATAGTGCC TGAAATGATG TATGTAAACA TTGCCACCTT TTTCATATGT 
    GACATCGTTC CGATACCAGA CGCTATTTAA TTGTTGTATT TCACTGCCT

    Gene models with high sequence identity

    1. AT4G16420.1 [+] show detail - homolog of yeast ADA2 2B
      E-value: 6e-149; Score: 525.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, ZZ-type 10.824
    ProfileScan SANT, eukarya 22.533
    HMMPIR Transcriptional adaptor 2 1e-294
    HMMPanther TRANSCRIPTIONAL ADAPTOR 2 (ADA2) 2.8e-252
    HMMPanther TRANSCRIPTIONAL ADAPTOR 2 (ADA2)-RELATED 2.8e-252
    HMMSmart Zinc finger, ZZ-type 1.6e-10
    HMMSmart SANT, DNA-binding 2.4e-11
    HMMPfam Myb, DNA-binding 4.1e-10
    HMMPfam Zinc finger, ZZ-type 4.4e-10
    HMMPfam SWIRM 7.4e-05
    superfamily Homeodomain-like 3.3e-13
    PatternScan Zinc finger, ZZ-type 0
    Coil coiled-coil 0

    See the detailed result >

    AT4G16420.1

    Model type
    Protein coding
    Short Description
    homolog of yeast ADA2 2B
    Curator Summary
    Transcriptional co-activator. Essential for the developmental switch from cell proliferation to cell differentiation in response to variations in auxin and cytokinin concentrations.
    Computational Description
    homolog of yeast ADA2 2B (ADA2B); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Transcriptional adaptor 2 (InterPro:IPR016827), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), SWIRM (InterPro:IPR007526), SANT, eukarya (InterPro:IPR017884), Zinc finger, ZZ-type (InterPro:IPR000433), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homolog of yeast ADA2 2A (TAIR:AT3G07740.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR