K19245

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19245

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19245

Determination of introduced cDNA(s)

  • J033126P14 - Rice Full-length cDNAs - Original: J033126P14

    full reading [+] show sequence

    Nucleotide sequence: J033126P14 - full reading
    GGTTGGAAGA AAATGACAAG CTTGTGCTTA CACCCTTTGA GAAGAACATT 
    GACATCTGGA GACAGCTTTG GAGAGTCCTT GAACGTAGTG ATCTGCTGGT
    GATGGTAGTC GATGCTCGAG ATCCCTTATT CTACCGCTGT CCTGATCTCG
    AGGTATATGC AAAAGAAATT GATGAACACA AGAGGACAAT GATTCTTGTC
    AACAAGGCTG ATCTGTTACC AATGAATATC AGGAAAAAAT GGGCAGACTA
    TTTTAAGGCA CATGATATTC TCTATGTTTT CTGGTCCGCT AAAGCTGCTA
    CTGCCACATT AGAAGGCAAA ATATTAAGTG GATACTCTGA ACAAGATTCT
    GCTTCACTTG ATTTGGACAC CAAGATATAT GGCAGGGATG AACTCTTAAA
    GAAATTGCAA ACTGAAGCAG AATTCATTGT AGCACAAAGG AGGGCCGCAG
    CCATCAAAGA GGACAGCAGA GCCACTTCCT CTGATTCTGT TTCATCAGTG
    GCTAAGCATG TTGTTGTTGG ATTTGTTGGT TATCCAAATG TTGGAAAGAG
    TTCAACAATC AATGCTTTAG TTGGTGAGAA GAAGACTGGT GTTACTCACA
    CACCTGGCAA AACAAAGCAT TTCCAGACGC TGATAATCTC AGAGGAGCTC
    ACTCTATGTG ATTGTCCTGG TCTGGTCTTC CCTTCCTTCT CAAGCTCAAG
    GCATGAGATG GTGTCATGTG GTGTCTTGCC AATCGATAGG ATGACTAAGC
    ACCGGGAAGC TATTCAGGTG GTGGCAGATC GTGTCCCAAG AAGTGTCCTT
    GAACAGATTT ACAAGATAAC TCTGCCAAAG CCAAAGCCAT ATGAATCGCA
    GTCGAGACCA CCAACTGCTG CTGAGCTGTT GCGAGCCTAC TGTGCATCCA
    GGGGGCATGT TAGCCATGCT GGACTTCCTG ACGAGACTAG GGCTGCTCGA
    CAGATACTGA AAGATTATAT CGATGGTAAA ATTCCACACT TCGAACTTCC
    TCCTGGCATG GTAGATACTG AAAATGAACA CGAAGAAACC TCCGGATTAG
    AAGGTCCAAC TACCTCAGCA TACAATGAAT CAGGTGGTTC CGATTCCGAT
    GAACGGGATG ATACAGTTGA TCCAGCACAA CCAGATATGA GGCATGTCCT
    TAGCGACCTC GAATCGTTTG ACCTGGCCAC TGAAGGGTCT AAACCTGCTG
    GGAAGAAGAA GAAAGAGGCA TCCCACAAGC AGCACAAGAA GCCCCAGAGG
    AAGAAGGACC GGTCATGGAG GGTCGGCAAC GATGGCGGCG ATGGAACTGC
    GGTCTTAAGG GTGTACCAGA AACCAGCTGT TAACCTCTCT GCCGTCAGTG
    CAAGCGACAA GACCTAGTAC CCTGATGGCA TATTGTGTTT TCAACTACAC
    TTGGCACACA TGGGCAATAA GGTCTTTGCT CCCTTGAGTT TTCTGGAGAC
    CCTGACCTTT GCATATGCAA AATCAAGAAA TCTGGTTTAC GCCTGCCGTG
    TTGAGTGGTA GGGGAAATTT TGCCGCCTGT GAGCAAAATT GCCGAGGCTT
    GCTTGCTCTG GTGGATGCGA GATCGGAGAC GAAAGCTATA TAGAAGAAGA
    AAATTTTCTG TTTTATTTCA GCTTTTGTTC CCCTGGCATT ATATACAGCC
    AGTGTGAATT GTGTGTGATA TGTGTACTGT TTGTTCCTCC ATGAATGATC
    AAGAAATTAA CATAGAAATT GTAATAACTT TTCACCAGTT TTGTTCGTCT
    CATTTGGTTC AAAATGTTGC ACACAAACAT TACTTGT

    Gene models with high sequence identity

    1. AT1G08410.1 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
      E-value: 3e-142; Score: 502.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther GTP-BINDING PROTEIN-RELATED 4.7e-129
    HMMPanther GTP-BINDING PROTEIN-RELATED 4.7e-129
    HMMPanther gb def: Hypothetical protein Y51H4A.20 0.00017
    HMMPanther STAT transcription factor, core 0.00017
    Gene3D no description 7e-35
    superfamily P-loop containing nucleoside triphosphate hyd 5.6e-37
    HMMPfam GTP-binding protein, HSR1-related 0.0000000002
    FPrintScan GTP1/OBG 0.0000032
    FPrintScan GTP1/OBG 0.0000032

    See the detailed result >

    AT1G08410.1

    Model type
    Protein coding
    Short Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Computational Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G27200.1); Has 7267 Blast hits to 7158 proteins in 1932 species: Archae - 109; Bacteria - 4700; Metazoa - 622; Fungi - 502; Plants - 285; Viruses - 0; Other Eukaryotes - 1049 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR