K19246

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19246

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19246

Determination of introduced cDNA(s)

  • J023074F05 - Rice Full-length cDNAs - Original: J023074F05

    full reading [+] show sequence

    Nucleotide sequence: J023074F05 - full reading
    GGCTCCTCCT CCTCTCAGAT TAGAAACCCC AGCGAGAGAG AGAGAGAGAG 
    AGGGAGAGAG AGAGAGAGAG AGGGAGGTGC GTGAATTGGC GGCCGATCTG
    GCCCGGGGAT GGGGGCAGCG GAGGAGCAGC TGAAGGAGCT CGGGGAGAAG
    CTGGAGGCGG CGCCGCCGGA CCCGGCCGAC GACCTCGCCA AGCTGCTCGA
    GCAAGCTGCA GAATGCCTAC ATGGAGTAGA GCAGTCACCA GGTCCCTCAG
    TGATGGAAAC TATCCAACCA TGTCTAAAGG CTGTTGCCAG AGATGAATTC
    TTGAAACACC ACGATGAAGA TGTCAAAGTA CTATTGGCAA CATGCTTCTG
    TGAAATTACA AGAATAACTG CTCCTGAAGC TCCATACAGT GATGATGTCT
    TAAGGGACAT GTTTCATCTG ATTGTGGATA CATTTAGTGG ACTCAATGAT
    GTTAATGGTA AATCCTTTGG CAGGAGAGTT GCTATTCTGG AAACAGTTGC
    GAGATACCGA GCATGTGTTG TCATGTTAGA CCTTGAATGC AATGATCTAA
    TTGCAGACAT GTTCCGATCT TTTTTAGAAA TTATCAGTGA CAATCATGAG
    CCAAATATTG TAAATTCAAT GCAATCAGTA ATGGCCCTAA TTATAGATGA
    AAGCGAGGAT ATAGAGGAAA GCCTTCTCAA TGTACTTCTA TCAACTTTAG
    GCCGGAAAAA AACTGGTGTT TCTTTGCCTG CACGCAAGCT TGCTCGCCAT
    GTTATAGAGC ACTCTGCAGG AAAACTTGAA CCATACATAA GGAAGATTCT
    GACATCATCC TTGGATGGGG ATGGTACTTC TACCAATAAT AGCATTGACC
    ATCACGAAGT CATATTTGAT TTGTACCAGT GTGCTCCAAA GGTTCTTAAA
    GTGGTGGTAC CTTATATAAC TGGGGAACTG CTGGCAGATG AAGTTGAAAC
    TCGGTCTAAA GCAGTTGAAA TACTTGGCGA ACTTTTCTCT TTACCTGGAA
    TCCCTATCTT GGAATCATTT AAATCTCTTT TCGATGAGTT CCTGAAGAGA
    TTGACTGACC GAGCTGTAGA AATTCGTGTT TCTGTAATTG AGCATTTGAA
    AAAATGTCTG ATGTCAAACC ATTCCCGTCC TGAAGCTCAA GAGATTATCA
    AGGCACTTTG TGACAGATTG TTGGATTATG AGGAAAATGT GAGAAAGCAA
    GTGGTAGCTG CTATTTGTGA TGTAGCTTGC CATTCACTTG GTGCAGTCCC
    AGTTGAAACT ATCAAACAAG TTGCGGAGCG TGTCCGTGAT AAATCAGTTT
    CTGTGAAGTG CTATACCATG GAGAGATTGG CTGACATCTA CAAGTTCTAT
    TGCCAGAGTG GTTCTGATAG CTCAGTAAAT TCTGATGATT TTGAGTGGAT
    TCCTGGAAAA ATATTAAGAT GCCTCTATGA CAAAGATTTT AGACCAGAGT
    CAATTGAATC AATTTTATGT GGTTCATTGT TCCCACCAGA GTATCCAACA
    AAGGAAAGAG TGAAACATTG GGTAACTGCT GTCACACATT TCGACAAAGT
    TGAGATGAAA GCTCTCGAGC AAATTTTTCT GCAAAAACAG AGGCTACAAC
    AAGAAATGCT GAAGTACATG TCCCTTCGAC AGACAAGCCA GGAAGATACC
    CCTGATATGA AAAAAAAGAT CCTGGGGTGT TTCCGGAGCA TGTCTCGTTT
    GTTCAATGAT CATACAAAGT CTGAGGAGTA CTTGAACATG CTTCATCAGA
    TAAAAGATGC CAACATCTGG AATATATTCA CAAGCTTGCT TGATTGTTCA
    ACAACATTCA ACGAAGCTTG GTCTCTTCGG GTTGATTTGC TAACGAAACT
    TGGTGAAAAA CATGCATTAC ATGATTTTGT GAGCACGTTG TCGATGAGAT
    GCTCATATTT ACTTGTGAAC AAGGAATATG TCAAAGAGAT CCTTTCTGAA
    GCTTCTGACC AAAAATCTAC TGGGAATACA AAACTTATGT CATCATGCAT
    GGATCTTTTA ACGGCAGTAT CTAGTTTCTT CCCTTCACTT TTGTCTGGAC
    TTGAAGAAGA TATCATTGAG CTCCTGAAGG AGGATAATGA ACTACTTAAA
    GAGGGTATTG CTCATGTTCT GTCGAAGGCT GGTGGCAACA TTCGTGAACA
    ACTAGCTTCA TCAAGTTCCA TTACTCTTCT ACTAGAGCGG CTATGTTTGG
    AAGGAACACG GAAGCAGGCA AAATACTCTG TTCATGCTTT GGCTGCTATA
    ACAAAAGATG ATGGCCTGAT GTCTCTATCT GTTCTTTACA AGAGGCTTGT
    GGACTTGTTG GAGGAAAAGA AAGTGCATTT GCCATCCATC TTACAATCCT
    TGGGGTGTAT AGCTCAGATA GCAATGCCAA TTTTTGAAAC AAGGGGAGAA
    GAGATAATAA ATTTTATAAC TAAAAAAATT CTTGACTGCA ATGATGATTC
    GGGCGACGTT TCTGCTCATA AATCTGAATG GAGTGATAGT ACTCAAAGTT
    GTTTATTGAA GATTTATGGC ATTAAAACTT TGGTGAAGAG CTGTCAACCT
    TGCAAAGATG CTCAAGCACA TCCGGGAATT GAAAAATTAA TGGGCATCCT
    TAAGAATATC CTTACATATG GTGATATTTC TGCAAATATG ATTTCAAGCA
    CTATTGATAA GGCCCATTTG AGGCTGGCGG CAGCAAAAGC TGTTCTCCGC
    TTATCAAGAC AATGGGACCA CAAAGTGCCT GTTGATGTAT TCTATTTGAC
    TCTCAGGATT TCACAGGATG ATGTTCCTCA GGTGAGGAAA TTATTTCTTA
    GTAAAGTACA TCAATATATT AAGGAAAGGG CCTTGGATGC AAAATATGCT
    TGTGCTTTCT TGTTAGCTAT GGATGATTAT CATGCCCCAC AGTATGAAGA
    GTTTAAGCAC AACATAATTG AGGTTGCGCA GATATGCCAG CAAGTTAAGA
    TGCGCCAACT TTCTGTCCAA GCGGAAACAA ATGTGCTCAC TGCTTATCCA
    GAATATATGA TTTCCTATTT GGTTCATGCC CTCTCTCATG ATCCATCATG
    TCCTAACATT GAAGAGCATG AGGATGTTGA AGCATTTGGT CCAATTTACT
    GGCGATTGCA TCTGCTTCTT TTGATCCTCC TGGGGGAAGA GGGTTTGCAG
    CACAGTGTAC CAGGCATGAA AAAGGAGAGC TTCACAACAA TAGTATCTAT
    ATTTAAAAGT ATCAAATATT CCCAAGATGT GGTTGATGTT AACAAGACCA
    AGACACTGCA TGCTATTTGT GATCTTGGTA TCCTTATTGG AAAGAAATTA
    TGTCAAGAGC AGATAAATAT ATCAGAAGCT CAAACAGTTT CACTGCCCAG
    TCAACTTTAT GCGCCAGTTC AGAAGGATCA GAATGAAAAT TCTGTGGAGA
    GTGATGAGCA GATATGGCCG GGTTGCGAGA ATGTGTTGGC CCATTTTGAG
    GCTCTTATGA CAGCAAAGTC TGCTGAGGTT GAATCTCCCA AGGATAAGAT
    GCTTATAGAT GAGACTGATG AATTTGGTAA TGAAGTTCCT CTAGGAAAAA
    TTGTGAAAAT TTTAAAATCT CAAGGAGCAA AAAAGGCTGG GAGAAAGCAG
    AAGACAAAAT CTGGTTCAAT AAACATGGAA AAAGATGATG ATGTCTTGGG
    ACTGGTTAGA GAAATAAACT TGGACAATCA AGAAAATTTG GGGGAATCAG
    AAAAGAGCAA ACCAAAGAAA AAGCGGATGG ATGCAAAAGA GAGTAATGAC
    AAGCCTGTAG ATTTTTCAAC ACCAAAACGC AAGAGATCAG TTTCTAAGAG
    TAGACCACAT TCAACGAAAG GCAACAAATA CAGTGATGAG CTTCTACTGC
    AGTCTGTTGA CCCAGATGAA ACTATCAACT CATTTGAAAA TAAGGTTGAG
    GGGGCCAAAA AAAGAGATGA CTCGGTTGAT ACTGAGTTGG TAACATCGCC
    TGCTAGTGTT AAAACCCCTG TATCCAAAGG GAAAAAGGGT GCTAAGAAGC
    CCCACGCTGA AATCTTGAGT AGTAGTCCAA AGAAGTCTGA TGAGGCAGGC
    AGTAGTAAGC GAACTGTTGA TTCGGGAAGT TTAAATGGGT CGATCAAAAG
    GCAGAAGCCA AAATTGGTTT CTGGTCTAGC AAAGTGCACA ACACATGACA
    CAGGCAGTGA GGACCTGATT GGAAAGAGAA TAAAAGTTTG GTGGCCGTTG
    GATAAGAAAT TTTATGAAGG TGTTGTGGAA TCTTTTGATT CATCAAAAAG
    AAGACACACG GTGCTATATG ATGATGGAGA TGTTGAAGTG CTTAACCTAG
    CTAAAGAAAA GTGGGAAATT GTTGCAAGTG ATGACCCGCC TGTAAAGGCC
    CGAAAAAAGG ATCATTCAGG GAGAAACCAA GGACGAGCTC AGGATAAAAG
    CATTACCAGC AGCAAGCAAA CTCCGCCGCC TGAACAAGAG AAGTCAAAAA
    AGAGGCCCTC ACCCCCAAAG AGGAAAGGCA AACCAAAAGG ACTGCCGAAA
    AACAAACGCA GAAAGATAGG GGGTAAAAGT TCTGTTGATG CTGCCGGTGA
    TGCGAATATT GATTCGGATT CATCAAGTTC TCTCGCACAC TCAGATTCTG
    ATAATGATAA AAAATCTGAT GGACGCAATG AGAAAGAAGT AGTAGTAGCC
    AAGAAAGCAA AAGCTGAGAA AGTGTCTGGC AAAGGTGATG AGCCAAAAGA
    GGAGGAACCT GATGACCATA ATTTAAACAG CAAGGAGGAA TCTGACAACG
    AGACTCTTAG TGTCTGGAAA AAACGCACAG CTAAAGCAAC ATAGGCTTTG
    CTTTCTCGGT TGATTATTCT TCGTAGGATG CAGATTTCAC GGGCAGCGGA
    TGGGGATGTG GATATCTCAT TTAATTGACC TTGGAATTGA CAGTTGTGAT
    GTAGAAAATG TTCTTTGCAA TAGCAACAGG TTTAGTATAG AAGAGCAGTG
    GAATAGGATT TGCTTCTAAT GTTACTAGAT GCTAGAACTT GTTTCCAACT
    TAATTAGCTA TGGCATTGTG CCCTGGAATT TCATTGTATA CGTATCCTTG
    AGAGGGCCAC AGGTCATGTA ACATATCCGT TTAGCATTAT TTTGCAGGAA
    TAGTGATTAT GTGTTAAAAC TCATGTAGAA ATGTTGTAAA CAATAAACAA
    TGGTTCTTGG ATTGTACTGT ACAACTAGAA TGGGCATCCC AATTTTGGGG
    TGCCTTATTC TGAAGCT

    Gene models with high sequence identity

    1. AT5G47690.3 [+] show detail - binding
      E-value: 0; Score: 999.99

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ANDROGEN INDUCED INHIBITOR OF PROLIFERATION ( 6.2e-189
    superfamily Armadillo-type fold 1.2e-21
    superfamily Tudor/PWWP/MBT 0.00000001
    Coil coiled-coil 0

    See the detailed result >

    AT5G47690.3

    Model type
    Protein coding
    Short Description
    binding
    Computational Description
    binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: cotyledon, guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G77600.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR